Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0675 ATGGAACGACTTCGTTGGAACCTCCTTTCCTTCCTCCTTCTATCACTGGTTTGCACGGTTCTCTCCGTGACGGACCCAAACGACGTGAAAATTCTGAACCAATTCAGAAAAGGGTTGAAGAACCCAGAACTATTACCGTGGCCCGAAGAAGGAGGAGACCCGTGTGGCAACCCTCAGTGGAAATACATCTTCTGCAACGGCGACAGAGTCTCTCAGATTCAAACCAAAAACTTGGGCCTCGCAGGCCCACTCCCTCACAACTTCAACCAACTCTCCATGTTAGAGAATCTGGGCCTTCAGATCAACAACCTCAATGGTCCCTTACCATCCTTCAGAGGCTTATCCAAACTAAAATACGCGTTTCTCAACCATAACGATTTCGATTCCATTCCCCAAGATTTCTTCATTGGACTCGAGAGTCTCGAGGTTGTCGCCTTGGATTATAACAACCTCAATGCCACTACTAATGGGTGGCAATTCCCTTCCACGTTGCAGGGTTCTGCACAGTTGACTAATTTGTCTTGTATGAGTTGCAATTTTGTTGGTTCGATTCCTGGGTTTCTGGGGAGCATGGTTTCTCTGTCGGTTTTGCAACTTTCTGGCAATAATTTATCCGGCGAGATTCCGGCGACATTTAATGGTGTTCCGGCGTTGCAGATTCTGTGGCTGAATAACCAGCAGGGTGGTGGGCTTAGTGGGAGTATTGACATTGTTGCAACCATGGTTTCGATGACGAGTTTGTGGCTTCATGGAAACCAGTTTCGAGGAACTGTTCCTGAGAAAATTGGGGATTTGGTTTCTCTCAAGGATCTTGATCTTAATGGGAACCAGCTTGTTGGGTTTGTTCCTGATGCTTTGGGTAAAATGCAGTTAGAAAGGTTGGATTTGAATAATAACCACTTCATTGGTCCAATTCCGAAATTTGCAGCTGCTAAGGTTACTTTTGCTTCGAATAATTTTTGTCAATCTAAACCTGGGGTTTTGTGTTCCTTTGAGGTAATGATGTTGTTGGAGTTTCTTGGCGGGTTGAATTATCCTTTGAATCTGGTTGATTCGTGGAGTGGTAATGACCCGTGTAATGGACCATGGTTGGGAATAAAGTGCAATGCTAAAGGAAAGGTGTCTATGATTGTTTTGACTAACTTTAATCTTAGTGGTACTTTAAGTCCTTCTGTTGCAAATTTGGGTTCTCTTGTTGAAATCAGATTGGGGGGTAACAATCTAAGTGGTAGCATACCAAGCGATTGGACTAGCTTGAGATATTTGACTCTGTTGGATCTAAGTGGCAATAACATTTCCCCTCCCTTGCCGAATTTCGGGAAAAGCTTGAAACTTGTGATTGATGGTAATCCTTTGTTAGTTCGTGGCATTGGCAAGCCAGAAGTTCCTCCATCTGGGACTGGCTTCCCTTCCCCATCCAGAAAGGCTGAACCACCTTCATATGGTGATCTTAAACCAAAGCCTCCGGCGGATTCAAATCCCAGTTCCGGTGATTCTCATGAATCAAGTAGTTCCAAAAGGAAAAACTTGGTTCCAATTGTAGCCCCCATTGTAGCTGTTGCAGCTGCAGCTTCTCTACTTGTTCCCCTTTATGTATACTGTTTCAGGAGGAGAAAAGGTGTCTCTGAGGGTCCAAGTTCACTAGTAATTCACCCTAGGGACCCATCTGATTCAGACAAAGTGCTAAAGATTGTTGTTGCTAACAACAGCAATGGAAACATTTCAACTGTTACTGGAAGTGGGTCTGGAAGTGCAAATGGAAATGGGGAGTCTCATGTCTTTGAAGCTGGAAATCTTGTCATATCAGTTCAAGTTCTTCGAAGTGTGACCAAGAATTTTGCACCAGAGAATGAGCTTGGACGTGGTGGATTTGGGGTTGTTTACAAGGGAGAATTGGATGATGGGACTAAAATTGCCGTGAAAAGAATGGAAGCGGGTGTGATTAGCAGCAAGGCCTTGGATGAATTCCAATCTGAAATTGCAGTTCTATCAAAAGTCCGGCACCGCCATTTAGTGTCTCTTTTGGGTTATTCAATTGAAGGTTCTGAGAGGATTCTAGTTTATGAGCATATGCCACAAGGGGCTCTCAGTATGCATCTTTTCCATTGGAAGGGCCTTCAACTGGAGCCCCTCTCTTGGAAGAGGAGGCTCAATATAGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATAGTCTAGCTCGCCAGAGCTTCATTCACAGAGATCTCAAGTCATCAAATATTTTGCTTGGGGATGACTTTAGAGCAAAAGTCTCAGATTTTGGATTGGTAAAACTTGCACCTGATGGCAAAAAATCTGTAGTGACCAGGCTTGCTGGTACATTTGGATACTTGGCACCTGAATATGCAGTGACAGGAAAGATCACTACTAAAGCAGATGTTTTCAGTTTTGGCGTGGTGCTGATGGAGCTGTTAACCGGATTAATGGCACTTGATGAGAATAGACCTGAGGAAAGCCAATACTTGGCATCATGGTTCTGGCACATAAAATCAGACAAGGAGAAACTAATGGCTGCTACTGACCCAGCCCTTGACATAAAGGAGGAAACATTTGATAGTATCTCCATCATTGCTGAGTTAGCCGGGCACTGCACTGCCAGAGAACCACACCAAAGGCCAGATATGAGTCACGCTGTGAATGTTCTGGCACCGCTTGTTGAAAAATGGAAACCACTACTTGATGACACCGAGGAGTATGCCGGCATAGATTATACTCTTCCCCTTAACCAAATGGTGAAGGACTGGCAAGAAACAGAAGGAAAGGACTTGAGCTATATGGACTTGCAAGACAGCAAAAGTAGCATCCCTGCAAGACCTACTGGATTTGCAGAGTCTTTTACTTCTGCTGATGGCCGGTGA 2880 0.4451 MERLRWNLLSFLLLSLVCTVLSVTDPNDVKILNQFRKGLKNPELLPWPEEGGDPCGNPQWKYIFCNGDRVSQIQTKNLGLAGPLPHNFNQLSMLENLGLQINNLNGPLPSFRGLSKLKYAFLNHNDFDSIPQDFFIGLESLEVVALDYNNLNATTNGWQFPSTLQGSAQLTNLSCMSCNFVGSIPGFLGSMVSLSVLQLSGNNLSGEIPATFNGVPALQILWLNNQQGGGLSGSIDIVATMVSMTSLWLHGNQFRGTVPEKIGDLVSLKDLDLNGNQLVGFVPDALGKMQLERLDLNNNHFIGPIPKFAAAKVTFASNNFCQSKPGVLCSFEVMMLLEFLGGLNYPLNLVDSWSGNDPCNGPWLGIKCNAKGKVSMIVLTNFNLSGTLSPSVANLGSLVEIRLGGNNLSGSIPSDWTSLRYLTLLDLSGNNISPPLPNFGKSLKLVIDGNPLLVRGIGKPEVPPSGTGFPSPSRKAEPPSYGDLKPKPPADSNPSSGDSHESSSSKRKNLVPIVAPIVAVAAAASLLVPLYVYCFRRRKGVSEGPSSLVIHPRDPSDSDKVLKIVVANNSNGNISTVTGSGSGSANGNGESHVFEAGNLVISVQVLRSVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGSERILVYEHMPQGALSMHLFHWKGLQLEPLSWKRRLNIALDVARGMEYLHSLARQSFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDENRPEESQYLASWFWHIKSDKEKLMAATDPALDIKEETFDSISIIAELAGHCTAREPHQRPDMSHAVNVLAPLVEKWKPLLDDTEEYAGIDYTLPLNQMVKDWQETEGKDLSYMDLQDSKSSIPARPTGFAESFTSADGR* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0675 959 Gene3D Ribonuclease Inhibitor 332 456 IPR032675 -
Apr8g0675 959 ProSiteProfiles Protein kinase domain profile. 613 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0675 959 SUPERFAMILY L domain-like 332 443 - -
Apr8g0675 959 CDD STKc_IRAK 619 892 - -
Apr8g0675 959 PANTHER OSJNBA0070M12.3 PROTEIN 2 959 - -
Apr8g0675 959 Pfam Protein tyrosine and serine/threonine kinase 616 888 IPR001245 GO:0004672|GO:0006468
Apr8g0675 959 Gene3D Phosphorylase Kinase; domain 1 580 690 - -
Apr8g0675 959 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 2 959 - -
Apr8g0675 959 SUPERFAMILY Protein kinase-like (PK-like) 589 899 IPR011009 -
Apr8g0675 959 Gene3D Transferase(Phosphotransferase) domain 1 691 907 - -
Apr8g0675 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Apr8g0675 959 MobiDBLite consensus disorder prediction 937 959 - -
Apr8g0675 959 SUPERFAMILY L domain-like 24 308 - -
Apr8g0675 959 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Apr8g0675 959 SMART serkin_6 613 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0675 959 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Apr8g0675 959 Pfam Leucine rich repeat N-terminal domain 335 369 IPR013210 -
Apr8g0675 959 Gene3D Ribonuclease Inhibitor 25 327 IPR032675 -
Apr8g0675 959 MobiDBLite consensus disorder prediction 457 506 - -
Apr8g0675 959 Pfam Leucine rich repeat 244 301 IPR001611 GO:0005515
Apr8g0675 959 SMART LRR_typ_2 265 288 IPR003591 -
Apr8g0675 959 SMART LRR_typ_2 191 214 IPR003591 -
Apr8g0675 959 SMART LRR_typ_2 114 137 IPR003591 -
Apr8g0675 959 SMART LRR_typ_2 395 419 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0675 Apr-Chr8 6300827 6304768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0675 80 894 Receptor kinase-like Gene Family AT5G07280 28.827 5.81e-77 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Apr8g0675 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0675 - - gmx:100781857 1437.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0675 8 6300827 6304768 Apr8g0675 8 6300827 6304768 ECH
Apr4g0379 4 3215300 3219285 Apr8g0675 8 6300827 6304768 PCT