Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0658 ATGTCCGCCGGCGCTGGAGCTTCCGACCGCCGTGCATCGCCGCCGAGGGAGACTGCCGGCGCCCCGAACCGGCCGCCGATGAAGCGCCACCTGACCTTCGTGACGAAACCGCCGTTTGCTCCGCCGGATGAATACCACAGCTTTTCGGCTTCCGACTCTCGGAGAGTCTCTGCCGATCGCGAGGCTGAAGCCGTCGTCGTTAGATCTCCGTTCATGAAGCGGAAGAGCGGAATGAATGACAGCGAAGGAGATTCACACTCTCAAAAGTGGAGTAACAGCCCTGGATACGCTAACGTAATAAATAGTCCCTTCAAAACTCCTGTGTCTGCAAAAGGAGGAAGGACACATAAACCAAAGGCTTCCAAAGAAGGCAAATCATGTCCTCCGACACCCATCCCAAATGCCGGTTCCCCTTCTCCTCCTACTCCTGCTGGCAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTCAAACACGCAGAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACTCTGGAGGTGCAAAAAAGGAGGATATATGATATAACTAATGTTTTGGAAGGCATTGGTCTCATCGAAAAAAAACTCAAAAACAGAATACATTGGAAGGGAATTGAATCTTCTACATCTGGTGAGGTGGATGGTGATATCTCTATGCTAAAGGCAGAAGTTGAGAAACTTTCATTGGAAGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAACAAAGGCTTCGTAGTTTGAGTGAAAATGAAAACAACCAGAAGTGCCTTTTTGTGACTGAAGAAGATATCAAGGGAGTACCTTGCTTCCAGAATGAAACTCTGATAGCAATTAAAGCTCCACATGGAACCACCCTGGAGGTCCCTGACCCTGAGGAAGCTGTTGACTATCCACAGAGGAGATATAGAATCATTCTTAGAAGTACAATGGGTCCTATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTCGAAGAGATTAATGGTACTGAGCTCCCCACGAGCTTCCCACTTGCTTCAAGTTCTGGGTCCAATGAACAAGTAGTGACCGAAACAGTTCCTTCTGAATGCAGTGGAAAAGAACTTGAACCTCAAGCTCAGTTCTCTTCTCATGCATACACTGATCCAAATGCTTCACAAGAGTTTGCTGGGGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGATGCTGATTATTGGCTTCTATCAGATGCTGATGTTAGCATAACAGATATGTGGAGAACAGATTCCACTATTGATTGGAATGGGGTAGACATGCTTCATCCTGACTTTGGAATTATGTCAAGGCCACAAACTCCATCACCTGGGTTTGCTGAAGCGCCATCTGCGGGAGCAAATTCTAGTCAGAGGTGA 1410 0.4631 MSAGAGASDRRASPPRETAGAPNRPPMKRHLTFVTKPPFAPPDEYHSFSASDSRRVSADREAEAVVVRSPFMKRKSGMNDSEGDSHSQKWSNSPGYANVINSPFKTPVSAKGGRTHKPKASKEGKSCPPTPIPNAGSPSPPTPAGSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISMLKAEVEKLSLEEQGLDDQIREMQQRLRSLSENENNQKCLFVTEEDIKGVPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEINGTELPTSFPLASSSGSNEQVVTETVPSECSGKELEPQAQFSSHAYTDPNASQEFAGGMMKIVPSDADNDADYWLLSDADVSITDMWRTDSTIDWNGVDMLHPDFGIMSRPQTPSPGFAEAPSAGANSSQR* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0658 469 SMART E2F_TDP_2 148 213 IPR003316 GO:0005667|GO:0006355
Apr8g0658 469 SUPERFAMILY E2F-DP heterodimerization region 226 330 IPR037241 -
Apr8g0658 469 CDD E2F_DD 229 330 IPR032198 GO:0046983
Apr8g0658 469 Gene3D - 220 330 - -
Apr8g0658 469 PANTHER TRANSCRIPTION FACTOR E2FB 25 453 - -
Apr8g0658 469 Gene3D - 142 215 IPR036388 -
Apr8g0658 469 MobiDBLite consensus disorder prediction 1 146 - -
Apr8g0658 469 Coils Coil 226 267 - -
Apr8g0658 469 MobiDBLite consensus disorder prediction 445 469 - -
Apr8g0658 469 Pfam E2F/DP family winged-helix DNA-binding domain 150 213 IPR003316 GO:0005667|GO:0006355
Apr8g0658 469 Pfam E2F transcription factor CC-MB domain 229 329 IPR032198 GO:0046983
Apr8g0658 469 PANTHER TRANSCRIPTION FACTOR E2F 25 453 IPR015633 GO:0000978|GO:0006357
Apr8g0658 469 MobiDBLite consensus disorder prediction 48 68 - -
Apr8g0658 469 SUPERFAMILY "Winged helix" DNA-binding domain 148 211 IPR036390 -
Apr8g0658 469 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0658 Apr-Chr8 6081497 6086275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0658 22 469 E2F-DP Transcription Factor Family AT2G36010 55.603 1.62e-162 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Apr8g0658 E2F_CC-MB 2.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0658 K06620 - gmx:100811762 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0658 8 6081497 6086275 Apr8g0658 8 6081497 6086275 ECH