Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0650 ATGGGTCGCGTTCGCACGAACACAGTGAAGAAATCCTCACGACAAGTGATCGAGAGGTACTACTCTCGCATGACGCTGGATTTCCACACTAACAAGAAGGTCCTCGAGGAGATAGCACTCATTCCCTCAAAGAGGCTTCGCAACAAGATCGCAGGGTTCTCCACTCATCTCATGAAGCGGATCCAGAAGGGTCCAGTGCGTGGCATCTCCCTCAAACTGCAGGAAGAGGAGAGAGAACGCCGCATGGATTTCGTCCCCGAAGTCTCTGCCATCAGAACCGAACAGATCGAGGTCGACAAGGAAACCCTAGACATGCTCGCTGCTCTTGGAATGTCCGAAATCCCCGGTGTCGTTCAGGTTGACCCTGTTACCGTTCAGGCGCCGCTAGGGTTCGGTCGCGGTGCTGGTGGAAGGAGGTATTAG 423 0.5437 MGRVRTNTVKKSSRQVIERYYSRMTLDFHTNKKVLEEIALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEVSAIRTEQIEVDKETLDMLAALGMSEIPGVVQVDPVTVQAPLGFGRGAGGRRY* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0650 140 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Apr8g0650 140 PANTHER 40S RIBOSOMAL PROTEIN S17 1 140 IPR001210 GO:0003735|GO:0005840|GO:0006412
Apr8g0650 140 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Apr8g0650 140 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Apr8g0650 140 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Apr8g0650 140 PANTHER 40S RIBOSOMAL PROTEIN S17 1 140 - -
Apr8g0650 140 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0650 Apr-Chr8 5993345 5994368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0650 1 140 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 78.723 2.78e-79 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0650 K02962 - gmx:100819067 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0650 8 5993345 5994368 Apr8g0650 8 5993345 5994368 ECH