Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0647 ATGTCCATAAACCACTACTCCATGGACCTTCCAGAAGCCACACTGTGGTGGACTCAGCAGGAACAACAACAACAACCCACCTTAATGGAACAAACCCAAAATCCACCCATTCATCCTTCTTGGCCCCCCCAACACCAACCCAAAGACCCACCTTTCCATTACCCCACTACGACACCCCGTTTCAACCTCAACAACCAAAACGACAACAACGACGACGACGAAGAAGAAGACGAAGACGACACTAACACCAACACCAACACCAACGACCAAACCACCACCACAACACCTCAAGAGACAGAACACGAAAAGGAACCCATGTTCGAGAAGCCTCTAACGCCAAGTGACGTGGGAAAACTCAATCGCCTCGTAATCCCAAAGCAGCACGCGGAAAAGTACTTCCCTCTCGCCGCTTCTTCTGGTGGCGGTGACTCGGGCGAGTGCAAGGGCTTGCTACTGAGTTTCGAGGACGAGTCAGGGAAGTGTTGGCGATTCCGTTACTCGTATTGGAACAGTAGTCAGAGCTATGTCCTCACTAAGGGTTGGAGCCGTTACGTTAAGGACAAGCGCCTCGATGCAGGCGACGTCGTTTTGTTCGAACGACACCGTAACGACGCTCACCGTCTCTTCATCGGATGGAGGCGCCGCCGACAGAGTGACACCGCCCCTGCGCACGTTAGCAGGGCGGTGGGACACGCCAAGAATGAGGTTGCTGCTGGTGTGGGCGTGGGCGTGGGGTGGACCAGAGGCTTCTATTCTGCGCATCCTTATCCTACGCATCATCACCCCTTGCCATACCAACATGACTGTCTTCATGCAGGTAGAGGGTCCCAAGGTCAGAAGCAAAGGACGAGACCGGTGGAAAACAGTTCAAGTTCGAGTTCGAGTTCAAAGGTACTTAGGCTGTTTGGGGTCAACATGGAATGCCAACCTGAACATGATTCTGGACCCTCCACACCCCAATGCTTCTACAACATGCCATCCACCCAGGGTACAGATAACCTCAATTTCTACCATCATCAACAACCTCCTTCCAATCCCCACCCTCACATGGTACGTCACCAACCATACTACTACTAG 1077 0.5274 MSINHYSMDLPEATLWWTQQEQQQQPTLMEQTQNPPIHPSWPPQHQPKDPPFHYPTTTPRFNLNNQNDNNDDDEEEDEDDTNTNTNTNDQTTTTTPQETEHEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLAASSGGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRNDAHRLFIGWRRRRQSDTAPAHVSRAVGHAKNEVAAGVGVGVGWTRGFYSAHPYPTHHHPLPYQHDCLHAGRGSQGQKQRTRPVENSSSSSSSSKVLRLFGVNMECQPEHDSGPSTPQCFYNMPSTQGTDNLNFYHHQQPPSNPHPHMVRHQPYYY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0647 358 MobiDBLite consensus disorder prediction 17 115 - -
Apr8g0647 358 Gene3D - 95 226 IPR015300 -
Apr8g0647 358 CDD B3_DNA 105 206 IPR003340 GO:0003677
Apr8g0647 358 MobiDBLite consensus disorder prediction 276 296 - -
Apr8g0647 358 Pfam B3 DNA binding domain 107 215 IPR003340 GO:0003677
Apr8g0647 358 MobiDBLite consensus disorder prediction 267 296 - -
Apr8g0647 358 MobiDBLite consensus disorder prediction 339 358 - -
Apr8g0647 358 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 33 319 - -
Apr8g0647 358 SUPERFAMILY DNA-binding pseudobarrel domain 103 218 IPR015300 -
Apr8g0647 358 SMART B3_2 107 216 IPR003340 GO:0003677
Apr8g0647 358 MobiDBLite consensus disorder prediction 17 35 - -
Apr8g0647 358 MobiDBLite consensus disorder prediction 68 83 - -
Apr8g0647 358 ProSiteProfiles B3 DNA-binding domain profile. 107 216 IPR003340 GO:0003677
Apr8g0647 358 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 319 IPR044800 GO:0003700
Apr8g0647 358 MobiDBLite consensus disorder prediction 36 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0647 Apr-Chr8 5964695 5966799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0647 103 330 RAV Transcription Factor Family AT5G06250 50.000 6.10e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr8g0647 B3 4.1e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0647 - - aprc:113872948 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0647 8 5964695 5966799 Apr8g0647 8 5964695 5966799 ECH
Apr4g0353 4 2998358 3000082 Apr8g0647 8 5964695 5966799 PCT