Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0628 ATGCCAATGTCACTGTCAATGTCATCATTTCTGCTAAAGCCCCACCCCCCCTTTCCCTCCCAATTCCAATTCCACCCTCACAAACCCATTCATTCCCTTCGAATCCACAACTGCACAACAAAAACCCACACACAAACCATCCAATTCCTCAAACCGTACCTTTTCTCCCAACACAAAACCATCCTCTGCGGTTGGCTCTGCAGTGCCGTCTCCGTCTATTCCCTCTCCAACCTTCTCTCCAAATTCTCCAAAATCGGCACCGTCACCACTCTCGATACCCTTCCCCTCGTCGCTCTCGTCGTTACGCGCTTGATCGCCACCTACGCGCAGCACGCTCTCCTTTGGGAAGCTTCCCTTAACGCCGTCTATGAACTCCGTTTGCACGTCTTCGATCGCGTTCTCCAGAGGGAACTCGCCTACTTCGAAGGAAACGACAGCCTTTCCGCCGGAGATATTGCGTATCGAATCACCGCCGAAGCTTCCGACCTCGCCGATACCTTTTACACTCTTCTCAACACCATAGTACCCAGTACCCTGCAGTTGTCGGCAATGATGATGCAGATGTTAGTTATAAGTCCTGCCCTTTCTTTGATTTCAGCAATGATTATTCCTTGCATGGTGCTAGTTGTTGCCTTGCTGGGTCAAGAACTTCGCAAGATATCCAAAGAGGCACATATTAGCATTGCTGCTCTCTCAGCTTATCTAAATGAGGTGCTTCCCGCAATTCTCTTTGTGAAAGCAAACAATGCAGAGTCGTGTGAGAATGCCAGGTTCAAGAGACTGGCTATGATGGACTATTCTGCAAAGCTGAAGAAGAGAAAGATGAAAGCTGTGATTCCTCAGGTTATACAAGCTATTTATTTTGGAATCCTTTCCATACTTTGCGCTGGTTCAGTGATGATTTCAAGAGGCTCATTTGATCGCTATATCTTGGTTTCATTTGTGACATCGTTGCTTTTCTTGATTGGGCCAATCCAGGATGTTGGAAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCAGCTGAACGCTTGTTTGCTATGACCAGGTTCAAAGATAAGGTAGTTGAGAAACAGGATGCTGTTGATTTGGACCGAGTTACAGGGGAGCTGAAATTTTGTGATGTCTCATTTGGATATAATGATGATATGCGACTTATTTTAAGTGGATTGAATCTTCACATCAGAACTGGAGAGATAGTTGCTATCGTGGGTCCTTCTGGTGGAGGGAAAACAACACTAGTAAAACTGTTGCTTCGGCTTTATGATCCAATATCTGGTTGTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGGCAAGTTTAAGAAGGCATGTAGGTGTTGTTTCTCAAGATATAACACTCTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAGGGTAAAGCTTGTAGCTAAAACTGCTCATGCAGATGAGTTCATTAAAAAACTTCCCGAAGGATACAAAACCAACATTGGACCAAGGGGCTCAACTTTAAGTGGAGGCCAGAGGCAAAGGCTGGCTATTGCACGGGCTTTCTATCAAAATTCTTCTATATTAATTCTGGATGAGGCAACTTCATCGTTAGACAGTAAATCTGAGTTATTAGTGAGACAAGCTGTAGAGCATTTGATGCAAAATCGCACAGTACTAGTGATTTCGCATCGCTTGGAAACAGTTATGATGGCTAAAAGAGTATTCCTTTTGGATAATGGGAAGCTAAAAGAGCTGCCTCGGTCAACTATGCTAGATGGTCAGAAGGATTCTTTGCTATCATCTGGACTTGTTATTTGA 1830 0.4415 MPMSLSMSSFLLKPHPPFPSQFQFHPHKPIHSLRIHNCTTKTHTQTIQFLKPYLFSQHKTILCGWLCSAVSVYSLSNLLSKFSKIGTVTTLDTLPLVALVVTRLIATYAQHALLWEASLNAVYELRLHVFDRVLQRELAYFEGNDSLSAGDIAYRITAEASDLADTFYTLLNTIVPSTLQLSAMMMQMLVISPALSLISAMIIPCMVLVVALLGQELRKISKEAHISIAALSAYLNEVLPAILFVKANNAESCENARFKRLAMMDYSAKLKKRKMKAVIPQVIQAIYFGILSILCAGSVMISRGSFDRYILVSFVTSLLFLIGPIQDVGKAYNEWRQGEPAAERLFAMTRFKDKVVEKQDAVDLDRVTGELKFCDVSFGYNDDMRLILSGLNLHIRTGEIVAIVGPSGGGKTTLVKLLLRLYDPISGCILIDNHNIQNIRLASLRRHVGVVSQDITLFSGTVAENIGYRDLTTKIDMERVKLVAKTAHADEFIKKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSSLDSKSELLVRQAVEHLMQNRTVLVISHRLETVMMAKRVFLLDNGKLKELPRSTMLDGQKDSLLSSGLVI* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0628 609 ProSitePatterns ABC transporters family signature. 511 525 IPR017871 GO:0005524
Apr8g0628 609 SMART AAA_5 397 585 IPR003593 -
Apr8g0628 609 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 41 599 IPR039421 -
Apr8g0628 609 Gene3D ABC transporter type 1, transmembrane domain 41 350 IPR036640 GO:0005524|GO:0016021
Apr8g0628 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 590 IPR027417 -
Apr8g0628 609 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 608 IPR003439 GO:0005524
Apr8g0628 609 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 41 599 - -
Apr8g0628 609 CDD ABC_6TM_exporters 96 345 - -
Apr8g0628 609 Pfam ABC transporter 388 539 IPR003439 GO:0005524
Apr8g0628 609 Pfam ABC transporter transmembrane region 68 324 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr8g0628 609 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 66 337 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr8g0628 609 Gene3D - 361 605 IPR027417 -
Apr8g0628 609 SUPERFAMILY ABC transporter transmembrane region 49 350 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0628 Apr-Chr8 5770121 5775212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0628 124 606 Calmodulin-binding Proteins AT2G36910 29.600 1.74e-55 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0628 K02021 - gmx:100788075 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0628 8 5770121 5775212 Apr8g0628 8 5770121 5775212 ECH