Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0600 ATGAAGGTGATCGCAGCGTATTTGCTGGCCGTGCTCGGAGGCAACAACAGCCCCTCCTCCGACGACATCAAGGAAATCCTTGGCTGCGTTGGATCTGAAGCAGATGATGAAAAGATTGAACAATTTTTGTCTGAAATTAAGGGTAAAGATGTAGTTGAGGTTGTTGCGGCTGGTAGAGACAAGTTGGCCTCTGTGCCTTCTGGTGGCGGTGGTGCCGTTGCCGTCGCCGCTGCTCCTGGTGGAGGTGCTGCTGCTCCAGCGGCTGCCGAGCCAAAGAAAGAGGAAAAAGTGGAGGAGAAAGAGGAATCTGATGATGATATGGGTTTCAGTCTCTTTGATTAA 342 0.5117 MKVIAAYLLAVLGGNNSPSSDDIKEILGCVGSEADDEKIEQFLSEIKGKDVVEVVAAGRDKLASVPSGGGGAVAVAAAPGGGAAAPAAAEPKKEEKVEEKEESDDDMGFSLFD* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0600 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Apr8g0600 113 MobiDBLite consensus disorder prediction 76 113 - -
Apr8g0600 113 Gene3D - 1 59 IPR038716 -
Apr8g0600 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Apr8g0600 113 Pfam 60s Acidic ribosomal protein 17 112 - -
Apr8g0600 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Apr8g0600 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0600 Apr-Chr8 5455936 5457336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0600 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 64.602 2.59e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0600 K02943 - gmx:100499761 122.479