Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0594 ATGCATTCGAGCAATGCAACAAGCAGTAGCAAAGGCTCTGCAGGAACAGAAACAGGTCGTCACGGAGTGTACCGAGGGGTGAGGCGCAGGAGTAGTGGAAAATGGGTGTCTGAAATCCGTGAACCCAAAAAGCCTAATAGAATTTGGTTAGGCACGTTTCCCACGCCTGAAATGGCAGCTGTCGCCTATGACGTCGCAGCGTTTGCTCTTAAGGGTAAAGATGCTGAGCTTAACTTCCCTAATTCCGTTTCTTCCCTTCCTACCCCTGCTTCTCTCTCTGCACGTGACATTCAGGTGGCTGCAGCCAGTGCTGCAGCTGCTGCTGGTGCAGCAAAAGATGCCATGGGCACACAGCCACAGAATAATAATGTTGCTGTTGCAGCCTCACAGGACCAGCATGGAGGGACCAGTGACCACTTTGTCGATGAGGATTTGATCTTTGACATGCCTAATGTTCTTGTCAATATGGCTCAGGGAATGCTGCTTAGTCCTCCTCCTTTTGATTTTGGTGGGGAAGAAAACATGGATGAACAAGAGCCTAACCTGTGGAATTTCCCTTAA 561 0.4955 MHSSNATSSSKGSAGTETGRHGVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAAFALKGKDAELNFPNSVSSLPTPASLSARDIQVAAASAAAAAGAAKDAMGTQPQNNNVAVAASQDQHGGTSDHFVDEDLIFDMPNVLVNMAQGMLLSPPPFDFGGEENMDEQEPNLWNFP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0594 186 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Apr8g0594 186 MobiDBLite consensus disorder prediction 1 35 - -
Apr8g0594 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 5 186 - -
Apr8g0594 186 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Apr8g0594 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 186 - -
Apr8g0594 186 MobiDBLite consensus disorder prediction 1 16 - -
Apr8g0594 186 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Apr8g0594 186 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Apr8g0594 186 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Apr8g0594 186 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Apr8g0594 186 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Apr8g0594 186 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0594 Apr-Chr8 5367371 5368141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0594 11 186 AP2-EREBP Transcription Factor Family AT2G36450 61.202 7.15e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g0594 AP2 5.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0594 - - gmx:100811614 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0594 8 5367371 5368141 Apr8g0594 8 5367371 5368141 ECH
Apr4g0293 4 2461778 2462429 Apr8g0594 8 5367371 5368141 PCT