Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0593 ATGTATGTGTGTGACTTGAGTGAAATTTTATGGGAATTCAGGGAAGCCATTTATGGGGGTCTGAATTTGAGGGCGAAATTGGAGGCTGCAGAAGGAGTTCTTGAATCAAAGTGCAAACCAGTTGTTGCTGAATTGCGGCGTGTGGAGGGTCGAGGATTCTGGTGTAAGCCAGCTTGGCGTTGGGATGGATATCAAACTGGGTTAGAGGGAGTGTTCTACATTGTTGGAGAGCAGGCCCGTCTTGTTTTGGTCATTGGACACTTGTCTATATTTGCTTTCAGAGGTACTGTCAAGATTAATGACAATCAGGATCCGACTCTGCCGCTTCTCCCACTGCTTCTCCTTCTTCACACTCTCTCTCTCTCTCTTCCAACTTCTTATTTCTTCATCACTTCTCCTTCTCTCTATCTCAACTCTCAACTCATGGAAACGGAAGATCACCATCATCATCACCATCACCACCACCACCACCATCAGCAACAACAGCATCAGTATGCCATGAACATGAACGATCTAAGACAAGTCGTTAATGGGCCGAGGCCGGTCCATAATTTCCCCTCCATGCCATCGCACCCCACGGCCGAGCTCTTCCCCGGCCACCGGAATCTGACAACCTTTCAACCACCCACTTCCCAGCATCACCAACAACACTACGAGGTCATGATGTTCGGTCGTGACATAATGCCACGTGGCCTTCACGACTTTGCCTCCGCCACTGATTCTGCTGCTGCAAGCATCACTATACCCACTCCTGTTACTGCAGCCGCCGCCACTGCTTCAACGCCTCCCCTTAGTGGCTTTGAGGTCGAGGGTGCAGGTTGCATCGGTGGAGATGCCTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTCGTTTGGACCCTAAATTCAAAGAGGCTAATCAGAAGGGACCCTTATGGGATGAAGTTTCTAGGATCATGTTTGAAGAACATGGATACCAAAGGAGTGGAAAAAAGTGCAGAGAGAAGTTTGAGAATCTATACAAATATTACAAGAAGACAAAAGAAGGTAAGGCAGGAAGACATGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAACAGTAACACAGTTTCAGTCCCAGAAACCAATGTTGTTAGCAGCATCCATTTTCAAACAAGTGGCCATGCCCCCGCCCCAACAAATCAAGAAATGTTTCAGTCTCACAATAAGCATTGTGATAGCCTCAGCCTCACTAACTCCACTGACTTTGACACATCATCATCTGATAATGATGGAAATAATCATACAATGGAGAATGAATCCATGGAGAAGAGGAGAAAGAGGAAGAGTGGGAGGAGCTGGAAGGTGAAGATAAAAAACTTCATTGACTCACAGATGAGGAAGCTCGTTGAGAAGCAAAAGGAGTGGTTGGATAAGCTGGTGAAGACACTGGAAGAGAAGGAAAGGGAGAGGGTGTTGAGAGAGGAAGAGTGGAGGAAACAAGAGGCAAGCAGGTTAGAGAGGGAGCAAAAGTTTTGGGCTAAAGAGAGGGCATGGATTGAAGCCAGAGATGCTGCTCTAATGGAGGCTTTGCAAAAACTAACAGCAAGAGAAATAATGAAGATTGAACCTCATGAGGGTGTAAATGTAATAGCAACTGGAGTTCAAAACCACAGTGAAAACCAGAATAATGAAGATGGAAGTGAAATCTTAAACTGCGGTACTGTCATCAGAGGTGCTGATAGCTGGCCAGAATCTGAGATTACAAGGCTTCAACAGTTGAGAGCTGAGATGGAAACAAGGTTTCCACAAAGTGAGTGTTCAGAAGAGGTTACATGGGAAGAAGTAGCAACCAAAATGGCTTGTTTTGGTTACCAAAGGAGTGCTTTGATGTGCAGAGAGAAATGGGAAAGTATCAGCAACTATCCAAGAGATGATGGTAAAGAAGGGAACAAGAAGCGCAGGGAAAACTCAAGAAGTTGTTTTTACTTCAAGAACAATGATGATCATCAACCTTCCCTATACAACCAAGGAAGTACCTATTGTGATGATATCAACGATCAAAGGCAGGAGATTGAGAGGCTACAAACAAATGATGGTTGTTCACCTTCAAATTCCAATGTTGGAAATGTTGCTCCAGCTGATAGCTGCTTTCCCTTCTTGATGAGTACTGAGGGAGGAAATCTGTGGGAGAACTATGGCTTAAAGCTCAATAAAGCAAACCAAAACCATTAA 2235 0.4501 MYVCDLSEILWEFREAIYGGLNLRAKLEAAEGVLESKCKPVVAELRRVEGRGFWCKPAWRWDGYQTGLEGVFYIVGEQARLVLVIGHLSIFAFRGTVKINDNQDPTLPLLPLLLLLHTLSLSLPTSYFFITSPSLYLNSQLMETEDHHHHHHHHHHHHQQQQHQYAMNMNDLRQVVNGPRPVHNFPSMPSHPTAELFPGHRNLTTFQPPTSQHHQQHYEVMMFGRDIMPRGLHDFASATDSAAASITIPTPVTAAAATASTPPLSGFEVEGAGCIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMFEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNTVSVPETNVVSSIHFQTSGHAPAPTNQEMFQSHNKHCDSLSLTNSTDFDTSSSDNDGNNHTMENESMEKRRKRKSGRSWKVKIKNFIDSQMRKLVEKQKEWLDKLVKTLEEKERERVLREEEWRKQEASRLEREQKFWAKERAWIEARDAALMEALQKLTAREIMKIEPHEGVNVIATGVQNHSENQNNEDGSEILNCGTVIRGADSWPESEITRLQQLRAEMETRFPQSECSEEVTWEEVATKMACFGYQRSALMCREKWESISNYPRDDGKEGNKKRRENSRSCFYFKNNDDHQPSLYNQGSTYCDDINDQRQEIERLQTNDGCSPSNSNVGNVAPADSCFPFLMSTEGGNLWENYGLKLNKANQNH* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0593 744 CDD GT1 283 348 - -
Apr8g0593 744 ProSiteProfiles Myb-like domain profile. 276 341 IPR001005 -
Apr8g0593 744 SMART sant 579 642 IPR001005 -
Apr8g0593 744 SMART sant 280 343 IPR001005 -
Apr8g0593 744 CDD GT1 583 642 - -
Apr8g0593 744 Pfam Myb/SANT-like DNA-binding domain 283 369 IPR044822 -
Apr8g0593 744 Pfam Myb/SANT-like DNA-binding domain 581 667 IPR044822 -
Apr8g0593 744 Gene3D - 583 644 - -
Apr8g0593 744 Gene3D - 284 346 - -
Apr8g0593 744 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 180 738 - -
Apr8g0593 744 PANTHER - 180 738 - -
Apr8g0593 744 ProSiteProfiles Myb-like domain profile. 582 640 IPR001005 -
Apr8g0593 744 Coils Coil 470 497 - -
Apr8g0593 744 MobiDBLite consensus disorder prediction 416 451 - -
Apr8g0593 744 MobiDBLite consensus disorder prediction 416 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0593 Apr-Chr8 5340396 5367571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0593 159 739 Trihelix Transcription Factor Family AT5G03680 44.811 8.97e-142 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr8g0593 Myb_DNA-bind_4 5.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0593 - - aprc:113870891 1382.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0593 8 5340396 5367571 Apr8g0593 8 5340396 5367571 ECH
Apr4g0292 4 2443660 2446688 Apr8g0593 8 5340396 5367571 PCT