Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0587 ATGAACCCAAACGATGATAACTCTCCCAAACTCTCATCACCCTTCAATGATTCCGCTCCCACGGAGCTTGAAGGGTCGTCAATGGCGCCGCAGCCACTGGAGATTTTGCAAATGAGCCCTGTTCCGCCGTTTCTGACCAAGACTTTCGACTTGGTGGATGACCCGTTTCTCGATCCGATTATCTCGTGGGGCTCCAATGGTGGGAGCTTCGTGGTGTGGGACCCTCTTGAGTTTTCGAGACTCGTTTTGCCTCGCCATTTCAAGCACAACAATTTCTCCAGCTTCGTTCGCCAGCTTAATACTTATGGATTCCGCAAGATTGACGCCGACAAGTGGGAGTTTTTTAATGAAGCTTTTCAGAGAGGGAAGAAGCACTTACTGAAGAACATCCAACGGCGCAGGTCAACTCAATCCCAGCAGGTTGGAAGCTACATTGGATTTTCTACTGATGCTGGGAAGTCTGGAGTTGAGGTTGAGATAGAAAAGCTTAGGAAGGAGAGAAGTATGTTAATGCAAGAGGTGGTTGATTTGCAGCAACAACAGCGAAAAACGGTTCACCATGCAGGAGAAGTGAATCAAAGGCTCCAATCTGCAGAACAAAGGCAGAAACAAATGGTTTCTTTCTTGGCTAAGTTGTTCCAAAACCCAGCCTTTTTAGCGCGCCTTAAGCATAAGAAGGATCCGAGAGAAATAGATTCTCCAAGAGTGATAAGAAAGTTTGTCAAGCAGCAACAACATGAAACAGGAACAGCTGAAACTTCCAATGATGGGCAGATAGTGAGGTACCAACCTGATTGGAGAAATATAGCCATGTCTTCTGAAACTCAAGAACCAAGTCCAGTTTCCATTGAGCAGTCCCCTAACTACCTTTCACAGGGTTTGGCAGGAGAAATGAGTGTAGGGGCAGAAGATTTTACTGCTGAGATTGAGAACATTGTATCAGATGATTTTGCTGCAGTGCACGGGATCATGTCGTCTCCAGAAATCATTGGAGAAGTATCATCTAGCCTTGGACCTGAAGACACCCTTTTCAGAGGGAAAAGTGTTGTGAGCCCAAATCTTGAAATTCCTTCAGAATATTTTGCTTCCTTCCCTGAGGTTTTGACTAAGGAAAAAGGCTTTCTTGAGTTTTCTGCCCTTGGAACTGAAGGCATTGTCAATCAAGAAGATATATGGAACCCTGGCTTCAATGTTAGTGGTGCTGCTTCATGCTCTGGGAATGAGATGTGGTGCAATCCTATCAATTATGAAGCTCCAGAATTTGGAGTCACAAGTGATATGTGTGAGTCAGACATGTGGGATATTGGCTCAGGAAGTTGGGGTATTGATGCATGGCCAGCTGATGAACCTTCTCTTGGTGAAACAGATGGTCAAGCTGGTCAACCAAAAGATGATAGGCCTAAGAATGTTGATCCATAG 1419 0.4524 MNPNDDNSPKLSSPFNDSAPTELEGSSMAPQPLEILQMSPVPPFLTKTFDLVDDPFLDPIISWGSNGGSFVVWDPLEFSRLVLPRHFKHNNFSSFVRQLNTYGFRKIDADKWEFFNEAFQRGKKHLLKNIQRRRSTQSQQVGSYIGFSTDAGKSGVEVEIEKLRKERSMLMQEVVDLQQQQRKTVHHAGEVNQRLQSAEQRQKQMVSFLAKLFQNPAFLARLKHKKDPREIDSPRVIRKFVKQQQHETGTAETSNDGQIVRYQPDWRNIAMSSETQEPSPVSIEQSPNYLSQGLAGEMSVGAEDFTAEIENIVSDDFAAVHGIMSSPEIIGEVSSSLGPEDTLFRGKSVVSPNLEIPSEYFASFPEVLTKEKGFLEFSALGTEGIVNQEDIWNPGFNVSGAASCSGNEMWCNPINYEAPEFGVTSDMCESDMWDIGSGSWGIDAWPADEPSLGETDGQAGQPKDDRPKNVDP* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0587 472 Coils Coil 153 180 - -
Apr8g0587 472 MobiDBLite consensus disorder prediction 443 472 - -
Apr8g0587 472 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Apr8g0587 472 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0587 472 MobiDBLite consensus disorder prediction 1 25 - -
Apr8g0587 472 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0587 472 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0587 472 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 27 465 - -
Apr8g0587 472 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 465 IPR027725 -
Apr8g0587 472 MobiDBLite consensus disorder prediction 1 27 - -
Apr8g0587 472 Gene3D - 37 134 IPR036388 -
Apr8g0587 472 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0587 472 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr8g0587 472 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0587 Apr-Chr8 5299523 5301916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0587 30 435 HSF AT5G03720 43.720 4.23e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr8g0587 HSF_DNA-bind 3.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0587 K09419 - gmx:100780835 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0587 8 5299523 5301916 Apr8g0587 8 5299523 5301916 ECH