Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0578 ATGTCATGCATGTGGCGCAAGAATGGGTGTGGTGGCAGTGAGAAGAAACCACCTGCGGATGTGCCACGCGGGCACTTGGCTGTGACAGTGGGAGAAGCAAAGAGAAGGTTTGTGATAAGAGCTGATTACCTTAACCATCCATTGCTTCAACAATTGCTGGAGCAAGCATCATATGAAGGCTACGGCTTCAACAAGAGTGGTCCTTTGGCTATACCCTGTGATGAGTTCCTTTTTGAAAATATTATTCAGTCCCTTCAACGTCAACCTCACGCGCGCCGATCCTCCTCTACCCACGTGCCTCTCAAGAACCTACACCATAGCTTCTCCAAGGACTCTCTACCTCTACTTCATCATGGTTTTGATAGTAAAAGCAGGAGCAGCAACTAA 387 0.4806 MSCMWRKNGCGGSEKKPPADVPRGHLAVTVGEAKRRFVIRADYLNHPLLQQLLEQASYEGYGFNKSGPLAIPCDEFLFENIIQSLQRQPHARRSSSTHVPLKNLHHSFSKDSLPLLHHGFDSKSRSSN* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0578 128 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 116 IPR003676 GO:0009733
Apr8g0578 128 PANTHER AUXIN RESPONSIVE SAUR PROTEIN 1 116 - -
Apr8g0578 128 MobiDBLite consensus disorder prediction 1 20 - -
Apr8g0578 128 Pfam Auxin responsive protein 15 85 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0578 Apr-Chr8 5189654 5190040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0578 5 105 Calmodulin-binding Proteins AT4G34750 48.039 5.77e-27 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0578 K14488 - aprc:113870875 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0578 8 5189654 5190040 Apr8g0578 8 5189654 5190040 ECH