Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0572 ATGGAGTGGAATGGGAGCACAAGACGCTATGTTCCTCGACCTGAGTCTTCTTTAAGCTTCCTCTACAACTATAGCTACACCCCATATCCAGGAATGGAAGTGAAGCAACAAGCACTGGCAGAGACACCCCCATCAATGGAAAAAATGAACTGTGGGAACCAAGAGAAGAAGAAGAGATTAACAAGTGACCAACTTGACTCGCTGGAGAGTAGTTTTCAGAAGGAGATAAAGTTGGACCCTGATAGAAAGATGAAGCTTTCAAAGGAGTTAGGGCTTCAGCCTCGTCAGATTGCTATTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGACCAAGCAACTTGAAAGTTTGTATGATACACTTAAACAAGAATTTGATGTCATATTCAAGGAAAAACAGAAGCTTGAGGAAGAGGTTATGAAGTTAAAGGCCATGCTGAGAGACCAAGCTTCTAGAACCCAAGTATCAACAGGTTATACAGAAATCTCTGGAGAGGAAACAGTAGAAAGCACGTCAGAAGCTCTTCGTTGTTCCAAAAGGGGAACCCTTCATCATCATCAGAACATTGGCGAGGGAAATTGTTCTTTCATTTTGGAAGATTATAATAACACTGTTCCAGTACTACCCTACTGGCCTGGTGCAACTTATTATCCCTAA 654 0.4235 MEWNGSTRRYVPRPESSLSFLYNYSYTPYPGMEVKQQALAETPPSMEKMNCGNQEKKKRLTSDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLESLYDTLKQEFDVIFKEKQKLEEEVMKLKAMLRDQASRTQVSTGYTEISGEETVESTSEALRCSKRGTLHHHQNIGEGNCSFILEDYNNTVPVLPYWPGATYYP* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0572 217 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Apr8g0572 217 SUPERFAMILY Homeodomain-like 44 113 IPR009057 -
Apr8g0572 217 SMART HOX_1 54 115 IPR001356 GO:0003677
Apr8g0572 217 Coils Coil 103 151 - -
Apr8g0572 217 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Apr8g0572 217 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Apr8g0572 217 MobiDBLite consensus disorder prediction 45 64 - -
Apr8g0572 217 Gene3D - 49 116 - -
Apr8g0572 217 CDD homeodomain 56 112 IPR001356 GO:0003677
Apr8g0572 217 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Apr8g0572 217 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Apr8g0572 217 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 208 IPR045224 GO:0003700
Apr8g0572 217 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 208 - -
Apr8g0572 217 Pfam Homeodomain 56 109 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0572 Apr-Chr8 5114627 5116677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0572 1 141 Homeobox Transcription Factor Family AT5G03790 50.617 4.78e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr8g0572 Homeodomain 6.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0572 - - gmx:100778007 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0572 8 5114627 5116677 Apr8g0572 8 5114627 5116677 ECH
Apr8g0572 8 5114627 5116677 Apr4g0270 4 2262990 2265020 PCT