Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0563 ATGTCGGTTCCTGCGACCGTCACCGCCACGTCGGCGTCGCTTTACGTCGGAGACCTCCACCCTGAGCTCTCCGACAGCCAACTCTTCGAGGCCTTTGAGGAGTTCAAGAGCCTATCCTCCGTTCGCGTCTGCAGGGACTCCGCCACAGGGAAATCACTCTGTTACGGTTACGTCAACTTTTTCTCTCACCAAGATGCAATTCGTGCAATCGAGTTGAAGAATAACTCGTATCTGAATGGAAAAGTGATAAGGGTCATGTGGTCACGCCGTGATCCTGATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCTGAATCCATAGATAATGCGAGGCTGCATGATTTATTTAAAAAATTTGGGAATATTTTGTCCAGCAAAGTTGTCATGTCTGAGGACGGGAGGAGCAAAGGGCATGGCTTTGTACAATTTGAGTCAGAGGAATCTGCAAATGCTGCCATTGAAAAGCTGAATGGCTCTACTGTGAGAGACAAACAGATATATGTTGGAAAGTTTGTCAAAAAAAGCGACCGCATTTTGCCTGTCCCTGATGCCAAATATACAAATTTGTACATTAAAAACTTGGACCCAAATGTTACTGAAGCGCTTCTTCAGGAAAAGTTCTCCTCTTTTGGGAAAATTATTAGCTTGGCTATTGCAAAGGATGACAGTGGGCTATCGAAGGGTTTTGCATTTGTGAACTATGATAAACCAGATGACGCTAGACAGGCGATGGAAGCAATGAATGGATTGCAATTTGGTTCAAAGAATCTGTATGTAGCTAGGGCACAAAAGAAGGCTGAACGTGAGCAAATCTTGCACCATCAATTTGAGGAGAAACGTAAGGAAAAATTCTTGAAATATAAGGGATCAAACATTTATGTCAAGAATATTGATGACAGCGTTAGTGACGAAGAACTACAAGATCAGTTTAGTTCATGTGGCACAATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCTACCCCTGAGGAGGCTAATATAGCTGTGCACACTTTCCATGGATCCATGTTCCATCGTAAACCACTGTATGTTGCTATTGCTCAGAGGAAAGAGGATAGGCAAACACAGCTGCAGCTCCAGTATGCACCGCAACCAGCAGGGTTAGCTGGACCTTCAACTGCAGTTATCCATGGTGGATTTTCACCTTACTTCTATACGGGTGTTGTTTCGCATATCCCTCAATCTGGGCTGTTGTATCAACCTCTGGGATTGAGATCAGGATATAGTGCTCATGGCTTTGCACCTTCCGCCGGATCATTTCAACAATCACAAGTTCCTATCGTTCCTAATAATAGTAGGCAGCATAAGCAAAACAGGGGCAGGATGAATGGACATATAAATTCTCTGGGAAAAGCTCAGTCTGGTGTGTTTATCCCACAACTGCAACAGAATTCTAAGGCAGCAGTCTCTTCAAAAGAGTCAAATACTCAGCAGACCGAACAGGCTAAGTATGTACCCAGGGAACGACAGCATAAGATGGAAACAAGATCAGGAATTTCATCTGCTGGAGGGTCCCAGGGGTCAGAAATGCTGCACAGCATGCTTGCTACTACTATTCCTGAGCAGCGGAAACGGATAATTGGGGAGCATCTTTACCCACTTATCCAGAAACTCACGTACAATCCTAGCCTAGCTGCAAAGATTACAGGAATGCTTTTGGAGATGGACAATGGAGAATTGCTGAATCTCCTGGAATCACCAGAGATTCTTTCAGCTGAGGTTGCAGTTAGTTGA 1800 0.4433 MSVPATVTATSASLYVGDLHPELSDSQLFEAFEEFKSLSSVRVCRDSATGKSLCYGYVNFFSHQDAIRAIELKNNSYLNGKVIRVMWSRRDPDARKSGRGNVFVKNLAESIDNARLHDLFKKFGNILSSKVVMSEDGRSKGHGFVQFESEESANAAIEKLNGSTVRDKQIYVGKFVKKSDRILPVPDAKYTNLYIKNLDPNVTEALLQEKFSSFGKIISLAIAKDDSGLSKGFAFVNYDKPDDARQAMEAMNGLQFGSKNLYVARAQKKAEREQILHHQFEEKRKEKFLKYKGSNIYVKNIDDSVSDEELQDQFSSCGTITSAKVMRDDKGISKGFGFVCFSTPEEANIAVHTFHGSMFHRKPLYVAIAQRKEDRQTQLQLQYAPQPAGLAGPSTAVIHGGFSPYFYTGVVSHIPQSGLLYQPLGLRSGYSAHGFAPSAGSFQQSQVPIVPNNSRQHKQNRGRMNGHINSLGKAQSGVFIPQLQQNSKAAVSSKESNTQQTEQAKYVPRERQHKMETRSGISSAGGSQGSEMLHSMLATTIPEQRKRIIGEHLYPLIQKLTYNPSLAAKITGMLLEMDNGELLNLLESPEILSAEVAVS* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0563 599 MobiDBLite consensus disorder prediction 488 505 - -
Apr8g0563 599 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 529 599 IPR002004 GO:0003723
Apr8g0563 599 Gene3D - 4 100 IPR012677 -
Apr8g0563 599 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 596 IPR006515 GO:0003723
Apr8g0563 599 Coils Coil 263 283 - -
Apr8g0563 599 Gene3D - 278 380 IPR012677 -
Apr8g0563 599 Gene3D - 180 277 IPR012677 -
Apr8g0563 599 Pfam Poly-adenylate binding protein, unique domain 537 596 IPR002004 GO:0003723
Apr8g0563 599 SUPERFAMILY RNA-binding domain, RBD 11 179 IPR035979 GO:0003676
Apr8g0563 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Apr8g0563 599 PANTHER POLYADENYLATE-BINDING PROTEIN 528 596 - -
Apr8g0563 599 PANTHER POLYADENYLATE-BINDING PROTEIN 6 517 - -
Apr8g0563 599 CDD RRM4_I_PABPs 293 371 - -
Apr8g0563 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Apr8g0563 599 Gene3D - 101 179 IPR012677 -
Apr8g0563 599 SUPERFAMILY PABC (PABP) domain 533 596 IPR036053 GO:0003723
Apr8g0563 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Apr8g0563 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Apr8g0563 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Apr8g0563 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Apr8g0563 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Apr8g0563 599 PANTHER RNA BINDING PROTEIN 528 596 - -
Apr8g0563 599 PANTHER RNA BINDING PROTEIN 6 517 - -
Apr8g0563 599 SUPERFAMILY RNA-binding domain, RBD 182 275 IPR035979 GO:0003676
Apr8g0563 599 Gene3D - 527 598 - -
Apr8g0563 599 SMART rrm1_1 295 367 IPR000504 GO:0003723
Apr8g0563 599 SMART rrm1_1 192 264 IPR000504 GO:0003723
Apr8g0563 599 SMART rrm1_1 101 173 IPR000504 GO:0003723
Apr8g0563 599 SMART rrm1_1 13 86 IPR000504 GO:0003723
Apr8g0563 599 SMART poly_2 541 599 IPR002004 GO:0003723
Apr8g0563 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Apr8g0563 599 CDD RRM2_I_PABPs 98 174 IPR045305 -
Apr8g0563 599 SUPERFAMILY RNA-binding domain, RBD 291 387 IPR035979 GO:0003676
Apr8g0563 599 CDD RRM1_I_PABPs 13 92 - -
Apr8g0563 599 MobiDBLite consensus disorder prediction 488 529 - -
Apr8g0563 599 SMART rrm2_1 192 264 IPR003954 GO:0003676
Apr8g0563 599 SMART rrm2_1 13 86 IPR003954 GO:0003676
Apr8g0563 599 SMART rrm2_1 295 367 IPR003954 GO:0003676
Apr8g0563 599 SMART rrm2_1 101 173 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0563 Apr-Chr8 5019416 5024628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0563 10 596 Eukaryotic Initiation Factors Gene Family AT2G36660 52.115 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0563 K13126 - gmx:100804671 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0563 8 5019416 5024628 Apr8g0563 8 5019416 5024628 ECH
Apr4g0260 4 2190745 2194930 Apr8g0563 8 5019416 5024628 PCT