Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0554 ATGGACTCCACCACCAACGTCTTGCCGGATTCCCAAAACGACGGCAGCAAAACGCAGCCGCAGAGAGTGAACGGTTACATCGTCTACACTAGAAGAAAGAGGCTCAAAACCAAGTGTGAAAGCCAAGTTCATGAAAACGATGCCGTTGCAAATGCGGATAGCAAATTGGAATTGAAGACGTCGAAGAAGATCATCTTGGTCAACAAGAAGCCAATGACCGTCAAAGAACTCTTCCATACAGGTTTGCTTGATGGGGTTCCAGTTGTCTACGTCGGTTGCAAGAAGGCTTCAACTTCGGGATTGCGGGGTGTAATTAGAGATGGGGGGATATTGTGCTCATGCCATCTGTGCGATGGACTCAGAGTTATTCCACCTTCTCAATTCGAGATTCATGCTTGCAACACATATAAGAGGGCAGCGGAGTATATTTGCTTTGAAAATGGGAAGAGCCTGCTTGAACTATTGGGAGCTTGCAGGGCAGCTCCCCTCCATACTTTGGAGGCGACCATTCAAAATTTTGTTTGTTCTCCGCCTGAGGAAAAATATTTTACTTGCAGAAGTTGCAGAGGATGTTTCCCTTCTTCCAGTGTGGAAAGAGTTGGGCTTATATGCCGTTCTTGCATGGAATCAAAGAAATCCGAAGACAGTTGTCTTCATGTAGTTGGCAAAAGAGTCAGGTTCCCTCGGCCAGCGCTATTCTCCAGAGCATGTTGTACTTCTGAACTGTGTATCTCTTCACAAACTAAAAGACACTGGAAGACAAGAACAAAGTCATCAAAACTGTCAGTAAAATTGAAGACTGCTCCAATCGCTTCAAATTCGAAGTGTTTATCTCCCCAAAACAAAAGTCAGTGGAGGATCACCAAAAAGCATCAAAGATTGAATAAATTAATTTTTGAAGAAGATGGATTGCCTAATGGAGCTGAAGTAGCTTATTATGCACGAGGGCAGAAATTGCTTGAGGGTATCAAAACGCAATTTGGAATTGTTTGTCGATGTTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGGTGGGCTTCTCGCAGGAAACCGTATGCATACATCTACACGTCAAATGGGGTGTCTCTCCTAGAGTTAGCAATATTTCTCTCAAAAGATCGCAAATGCACTGCAAAATGTAATGATGATGTATGCATTGTTTGTTGGGATGGTGGTAACCTGTTGCTCTGTGATGGATGTCAAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTATTCCACGTGGTGACTGGTACTGTCAAATTTGTCAACACATGTACCTTGGAGAAGGGTCTATGTTATACAATGCTGATGCTGTGGCTGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAGCAGATTGCCAAGAGATGCATTCGCATAGTAAAAGACATTGAAGCTGAGATGGGTGGATGCATTTTATGCAGGGCTTCTGACTTCAGCAGATCAGGCTTTGGCCCACGCACAATTATAATCTGTGATCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGCGATCATAAGATGGCATATTTAAAGGAGTTGCCAGAAGGGGATTGGCTTTGTTGCAATGATTGCACAAGAATACATTCTACTTTGGAGAATCTCCTGGTTAGGGTGGCTGAGAGACTCCCTGAATCTCTTTTGGATGTTATAAAGAAGAAGCAAGTGGAAAGATGTGTAGAACCGCCTAATGAGTTTGATGTAAGATGGAAACTTCTTAATGGAAAAATTGCTTCTCCTGAAACCAGGCCATTGCTTTTGGAGGCTGTGTCAATGTTTCATGAATGCTTTAATCCTATAGTTGATGCAGTTACTGGACGTGACCTTATTCCTGCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTGATTGTCAATTCATCTGTGGTATCTGCGGGTATGCTTCGAATTTTCGGTAGTGAAATTGCAGAACTCCCTTTAGTTGCAACGAGATATAAGAACCGTGGACAGGGCTACTTCCAAACACTTTTCTCGTGCATTGAGAGGCTGCTGGCTTTCTTGAATGTGAAAAACCTTGTGCTACCGGCTGCTGAAGAAGCAGAATCTATATGGACAAATAAATTTGGGTTTAGCAAGATGAAACCCGACCAGCTTACCAACTTTAGAATGAACTGCCATCATATTATGGCATTTAAAGGGACAATTATGCTTCATAAAACGGTGCCTCAATGTCGGGTTATCACCCCTCAATCATGA 2265 0.43 MDSTTNVLPDSQNDGSKTQPQRVNGYIVYTRRKRLKTKCESQVHENDAVANADSKLELKTSKKIILVNKKPMTVKELFHTGLLDGVPVVYVGCKKASTSGLRGVIRDGGILCSCHLCDGLRVIPPSQFEIHACNTYKRAAEYICFENGKSLLELLGACRAAPLHTLEATIQNFVCSPPEEKYFTCRSCRGCFPSSSVERVGLICRSCMESKKSEDSCLHVVGKRVRFPRPALFSRACCTSELCISSQTKRHWKTRTKSSKLSVKLKTAPIASNSKCLSPQNKSQWRITKKHQRLNKLIFEEDGLPNGAEVAYYARGQKLLEGIKTQFGIVCRCCNTEISPSQFEVHAGWASRRKPYAYIYTSNGVSLLELAIFLSKDRKCTAKCNDDVCIVCWDGGNLLLCDGCQRAFHKECASVSSIPRGDWYCQICQHMYLGEGSMLYNADAVAAGRVEGVDPIEQIAKRCIRIVKDIEAEMGGCILCRASDFSRSGFGPRTIIICDQCEKEYHVGCLSDHKMAYLKELPEGDWLCCNDCTRIHSTLENLLVRVAERLPESLLDVIKKKQVERCVEPPNEFDVRWKLLNGKIASPETRPLLLEAVSMFHECFNPIVDAVTGRDLIPAMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMLRIFGSEIAELPLVATRYKNRGQGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTNKFGFSKMKPDQLTNFRMNCHHIMAFKGTIMLHKTVPQCRVITPQS* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0554 754 SUPERFAMILY FYVE/PHD zinc finger 377 430 IPR011011 -
Apr8g0554 754 PANTHER AUTOIMMUNE REGULATOR 33 750 - -
Apr8g0554 754 Pfam Tify domain binding domain 325 372 IPR032308 -
Apr8g0554 754 Pfam Tify domain binding domain 103 155 IPR032308 -
Apr8g0554 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 451 IPR013083 -
Apr8g0554 754 SUPERFAMILY FYVE/PHD zinc finger 468 530 IPR011011 -
Apr8g0554 754 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 632 717 IPR016181 -
Apr8g0554 754 ProSiteProfiles Zinc finger PHD-type profile. 386 431 IPR019787 -
Apr8g0554 754 ProSitePatterns Zinc finger PHD-type signature. 389 428 IPR019786 -
Apr8g0554 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 535 IPR013083 -
Apr8g0554 754 SMART PHD_3 476 533 IPR001965 -
Apr8g0554 754 SMART PHD_3 388 429 IPR001965 -
Apr8g0554 754 MobiDBLite consensus disorder prediction 1 23 - -
Apr8g0554 754 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 33 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0554 Apr-Chr8 4911525 4920723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0554 61 750 PHD Transcription Factor Family AT2G36720 51.166 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0554 - - gmx:100798276 1259.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0251 4 2119924 2133411 Apr8g0554 8 4911525 4920723 PCT