Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0542 ATGGCAGTTCCAGGGAGGCGCAATGGCATGAACGACGACGAAGAAGACTTAGACGACAACGCTCTTTTCGAAGAAGAAGGTCTCCTCGAACTCGAACTCGAAAACGACAGCGACACGCCTCCTCATCTCCGTGACCTCTCCGCTGCCGCTCAGCTCGGGGACCTCCACGCCCTCCGCCTCGCTCTAGATAACTTGAATGGCAGTATCGATGAGCCTGTGGAGGACGGTGATACAGCTCTTCATTTAACATGTTTATATGGCCATTTGGCGTGTGTTCAGCTGTTGCTAGAAAGAGGAGCGAACATGGAGGTTAACGATGAAGATGGTGCAATTCCTTTGCACGATGCTTGTGCTGGAGGATTTATCGAGATAGTTCAACTGTTTCTTAACAGAGCTAATGATGCAGAACATATAAAAAGAATGCTAGAATCAGTTGATTCTGAGGGTGATACTCCTCTCCATCACGCCGCAAGGGGTGAGCATGTTGATGTAATTAGGTTGTTGCTGTCTAATGGGGCGTCTTTGACAAAGGCAAACTTGTATGGAAAGACCCCGGCAGACTTACCTGATCAGGACACGGATGCTAAGAGGCTGCTCGAAGCTGCCGCTACTGCCATGGCATGTTAA 627 0.4944 MAVPGRRNGMNDDEEDLDDNALFEEEGLLELELENDSDTPPHLRDLSAAAQLGDLHALRLALDNLNGSIDEPVEDGDTALHLTCLYGHLACVQLLLERGANMEVNDEDGAIPLHDACAGGFIEIVQLFLNRANDAEHIKRMLESVDSEGDTPLHHAARGEHVDVIRLLLSNGASLTKANLYGKTPADLPDQDTDAKRLLEAAATAMAC* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0542 208 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Apr8g0542 208 SUPERFAMILY Ankyrin repeat 45 188 IPR036770 -
Apr8g0542 208 ProSiteProfiles Ankyrin repeat region circular profile. 148 179 - -
Apr8g0542 208 ProSiteProfiles Ankyrin repeat profile. 108 140 IPR002110 GO:0005515
Apr8g0542 208 SMART ANK_2a 75 104 IPR002110 GO:0005515
Apr8g0542 208 SMART ANK_2a 148 177 IPR002110 GO:0005515
Apr8g0542 208 SMART ANK_2a 108 137 IPR002110 GO:0005515
Apr8g0542 208 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 204 - -
Apr8g0542 208 ProSiteProfiles Ankyrin repeat region circular profile. 75 107 - -
Apr8g0542 208 Pfam Ankyrin repeat 149 178 IPR002110 GO:0005515
Apr8g0542 208 PANTHER TANKYRASE-LIKE 1 204 - -
Apr8g0542 208 Pfam Ankyrin repeats (3 copies) 47 131 IPR002110 GO:0005515
Apr8g0542 208 ProSiteProfiles Ankyrin repeat profile. 148 180 IPR002110 GO:0005515
Apr8g0542 208 Gene3D - 40 207 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0542 10 191 Ion Channels AT2G25600 29.612 2.45e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0542 - - gmx:100804303 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0542 8 4792528 4794779 Apr8g0542 8 4792528 4794779 ECH