Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0541 ATGCATGTCCAAGAGGAATTACTTGTGGTTTCCAATGATCACACACAAATGATCATCAAAGGGAAGCGCACCAAGCGTCAAAGGGCACCATCCCCTCTTAGGCTAGCCATGCCTTCAACCCCTTGTAGTGTTGGTGGAAGTAGCACTAGCACTTCCATAGGACTTGATAGTGCCACAACCTCACCCACCACCACAATTGAATTGAGGGAAAGAACCGAAGAAGAGGAAGACATGGCTAATTGTCTCATTCTCTTGGCTCAAGGTAATCATCACGTGGCTGCACCTACACCACAACGTCACAATAACAATAATAATAATAAGTCAAGCCTATTACTTTACCAATGCAAGACTTGCAACCGATGCTTCCCTTCATTCCAAGCACTTGGGGGACATAGAGCCAGCTACAAGAAACCTAAGCAAAACGGTTCTTTCACAGAAGAAAAGCAAGCGGTTACTAGTTTTGTGAAAGAAGAGGTTGATCATTGTGACCCCACCACAAGCACCACCCTCTCCTTGCAAATATCAAATAGGGTTAACTTGTGTAGCAGCAACACTGCTACTACTTCTTCTACAACAAAATCTAAAGTTCATGAGTGTTCTATCTGCGGTGCTGAATTCTCATCTGGGCAAGCCTTGGGGGGACATATGAGGCGGCACAGAAATTTTGTCAACACATCTACAACAAAGTCTATGAGCAGTGGAAATATTGGTGGTGGTAGCCATGAATCGCAAGAGGCCAAGAAACCCTTGAAGTTTGACTTGAATCTTCCAGCACCAAAGGAAGATCAGAGAGAATCCAAGTTTTCGTTTCAGCCTAGAGAAAACGTTATTGTCTTCTCTACATCTTCTTTGGTGGATTGCCACTACTGA 870 0.4414 MHVQEELLVVSNDHTQMIIKGKRTKRQRAPSPLRLAMPSTPCSVGGSSTSTSIGLDSATTSPTTTIELRERTEEEEDMANCLILLAQGNHHVAAPTPQRHNNNNNNKSSLLLYQCKTCNRCFPSFQALGGHRASYKKPKQNGSFTEEKQAVTSFVKEEVDHCDPTTSTTLSLQISNRVNLCSSNTATTSSTTKSKVHECSICGAEFSSGQALGGHMRRHRNFVNTSTTKSMSSGNIGGGSHESQEAKKPLKFDLNLPAPKEDQRESKFSFQPRENVIVFSTSSLVDCHY* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0541 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Apr8g0541 289 PANTHER ZINC FINGER PROTEIN ZAT5 11 288 - -
Apr8g0541 289 SUPERFAMILY beta-beta-alpha zinc fingers 113 219 IPR036236 -
Apr8g0541 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 219 IPR013087 -
Apr8g0541 289 MobiDBLite consensus disorder prediction 41 63 - -
Apr8g0541 289 Pfam C2H2-type zinc finger 113 138 - -
Apr8g0541 289 Pfam C2H2-type zinc finger 196 220 - -
Apr8g0541 289 MobiDBLite consensus disorder prediction 38 63 - -
Apr8g0541 289 MobiDBLite consensus disorder prediction 225 240 - -
Apr8g0541 289 SMART c2h2final6 197 219 IPR013087 -
Apr8g0541 289 SMART c2h2final6 113 133 IPR013087 -
Apr8g0541 289 MobiDBLite consensus disorder prediction 225 247 - -
Apr8g0541 289 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Apr8g0541 289 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 11 288 - -
Apr8g0541 289 Gene3D Classic Zinc Finger 175 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0541 Apr-Chr8 4786773 4787642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0541 7 289 C2H2 Transcription Factor Family AT5G03510 40.523 4.85e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g0541 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0541 - - gmx:100815595 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0541 8 4786773 4787642 Apr8g1843 8 28871441 28872430 ECH
Apr8g0541 8 4786773 4787642 Apr8g0541 8 4786773 4787642 ECH
Apr8g0541 8 4786773 4787642 Apr2g2160 2 26727490 26728902 ECH
Apr8g0541 8 4786773 4787642 Apr3g1310 3 27559012 27560326 ECH
Apr4g0236 4 1994679 1995515 Apr8g0541 8 4786773 4787642 PCT