Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0538 ATGCTCCAAACAACCTACATTATACTAATCTCTATTCTGGCCTCATTTTTACCCCATGGAACAGCAATGCTCAACCTCACTCTGCCCGGCCAACACCCAGACCCCGAATCCGTTGCCCGAGAACTTCACAGGAAGGTGAATGCCTCAATTACAAGAAGGGAAATGCTCGCAGTGTCAGAGAAAGAGGTGGGGTCGTGCCTAACGGGGAACCCCATCGACGATTGCTGGAAATGCGACCCAGATTGGGCCAACAACAGGCAAAGACTAGCTGATTGTGCAATTGGGTTCGGCCAGAACGCAATGGGAGGGAAAGGTGGTCAATTTTACATTGTTACTGATTCCTCAGATGATGACCCTGTTAACCCAAAACCTGGCACGCTTAGATACGCGGTTATACAGAATGAGCCTTTGTGGATCGTTTTCCCCAGTAATATGATGATTAAGCTCTCTCAAGAACTCATTTTTAACAGCTACAAGACCATTGATGGGCGTGGCGCTGATGTTCACATTGTGGGTGGAGGGTGCATTACTTTGCAGTATATAAGTAACGTCATCATACACAACATTCACATCCACCATTGTCACCCCTCCGGTAACGCTAACGTGCGGTCGAGCCCAGAGCACTACGGGTACAGAACAGAATCAGACGGCGACGGAATATCGATATTCGGAGCAAAGGACATATGGATCGACCACTGCACGCTGTCGCGTTGCAAGGACGGTTTAATAGACGCAGTGATGGGTTCAACGGGGATAACGATCTCAAACAACCACTTTTCACACCACAACGAAGTGATGCTACTGGGGCACAGCGACCACTACTTGCCAGACTCCGGGATGCAGGTGACGATAGCCTTCAACCACTTCGGGGAGCAGCTGGTGCAGAGGATGCCACGTTGCAGGCTGGGATACATCCACGTGGTCAACAACGACTTCACGCGCTGGGAGATGTATGCCATTGGGGGGAGTGGGGCACCCACGATTAACAGCCAAGGGAACCGCTACACTGCGCCTGAGGATGGTTACGCCAAGGAAGTGACCAAGAGGTTGGACTCTGGCGAAGGGGATTGGAGTGGCTGGAATTGGCGGTCCGAAGGAGATGTTATGCTCAATGGAGCATTCTTTGTGGCTTCTGGCCAAGGCGCTGAGGCTAAGTATCAAAAGGCTTACAGCGTTGAACCTAAGTCTGCAGATCGCATTTCCCTCCTCACCATGTCCGCTGGTGTTCTCGGCGTTGCCAGCAGGGACAATAATCTCGGAATGTGGACTAGAGGACCCAACGATGGTGGCACTTATATTTCAGATATCGGCCCAGAATACACTGACGATATGTCCCGGAGCACAATGGTGTTCCCACCTTCACCTAACTTGATTATTCTATCTGTTTTCGTTGCATTGTCGTGCTTGTTATCTCGTACGACAACCTTAACATTAGTTCTATGA 1443 0.5031 MLQTTYIILISILASFLPHGTAMLNLTLPGQHPDPESVARELHRKVNASITRREMLAVSEKEVGSCLTGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAMGGKGGQFYIVTDSSDDDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFGAKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNHFSHHNEVMLLGHSDHYLPDSGMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGAPTINSQGNRYTAPEDGYAKEVTKRLDSGEGDWSGWNWRSEGDVMLNGAFFVASGQGAEAKYQKAYSVEPKSADRISLLTMSAGVLGVASRDNNLGMWTRGPNDGGTYISDIGPEYTDDMSRSTMVFPPSPNLIILSVFVALSCLLSRTTTLTLVL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0538 480 Gene3D - 69 411 IPR012334 -
Apr8g0538 480 PANTHER PECTATE LYASE 1 432 - -
Apr8g0538 480 SMART amb_all 144 341 IPR002022 -
Apr8g0538 480 SUPERFAMILY Pectin lyase-like 60 399 IPR011050 -
Apr8g0538 480 PANTHER PECTATE LYASE 18-RELATED 1 432 IPR045032 GO:0030570
Apr8g0538 480 Pfam Pectate lyase 153 321 IPR002022 -
Apr8g0538 480 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Apr8g0538 480 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Apr8g0538 480 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Apr8g0538 480 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Apr8g0538 480 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Apr8g0538 480 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Apr8g0538 480 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Apr8g0538 480 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0538 Apr-Chr8 4755650 4758844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0538 1 477 Polysaccharide Lyase AT3G53190 71.369 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0538 K01728 - gmx:100815062 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0538 8 4755650 4758844 Apr8g0538 8 4755650 4758844 ECH
Apr4g0230 4 1946539 1949150 Apr8g0538 8 4755650 4758844 PCT