Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0537 ATGCAAGGAGAAGATTTGCGTAAAGGGACTTGGCTCCAAGAGGAAGATGAACAATTAACCAGCTTTGTGACCCGTCTTGGGGAACGAAGGTGGGACTCCCTTGCCAAAGTAGCTGGCCTTAGGAGAAGTGGTAAAAGTTGCAGGTTAAGGTGGATGAATTATCTTCGTCCAAATCTCAAGCATGGCCATTTTAGTGATGAAGAAGAGCAGCTTATTTTTCAGCTTCAACAGCAATGGGGTAACAAGTGGTCCAAGATTGCTCGTAGACTCCCGGGAAGAACTGACAATGAAATCAAGAATTACTGGAGGACTCATTTAAAAAAAAGACCACGAGTTCAACAAGAAGGAGAGTGCAAGTATAAATCAGAAAATGCAGCACAAGATTTCAACCAGAAAAGCATTGATTTGGCTTCCAAGGATTACAACCATGAAATTTTTTGCCTTCAAGAAAGTGAGTGGGAGACTAACGATAGCTCCACAGACACATTTCCTTTATCAGATTGGGAATTGAGAAGCTCACCCTATGAAACTAGGATATTAGATTGGATGGCAAAATTGCAAGATGGATATGGTGAGAAAGAATTAGAACAAGATTGTAATAGCATAGTTACGTTCAACTATAATAATAATCCTCAAGAATTTGTAGAGGGCTGTGATACATGGAATTATTCAGGTTCCTTGTGGGATATGAACTAA 696 0.4009 MQGEDLRKGTWLQEEDEQLTSFVTRLGERRWDSLAKVAGLRRSGKSCRLRWMNYLRPNLKHGHFSDEEEQLIFQLQQQWGNKWSKIARRLPGRTDNEIKNYWRTHLKKRPRVQQEGECKYKSENAAQDFNQKSIDLASKDYNHEIFCLQESEWETNDSSTDTFPLSDWELRSSPYETRILDWMAKLQDGYGEKELEQDCNSIVTFNYNNNPQEFVEGCDTWNYSGSLWDMN* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0537 231 PANTHER MYB TRANSCRIPTION FACTOR 3 231 - -
Apr8g0537 231 SMART sant 7 57 IPR001005 -
Apr8g0537 231 SMART sant 60 108 IPR001005 -
Apr8g0537 231 Gene3D - 8 60 - -
Apr8g0537 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Apr8g0537 231 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Apr8g0537 231 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Apr8g0537 231 Gene3D - 62 136 - -
Apr8g0537 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Apr8g0537 231 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Apr8g0537 231 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 231 - -
Apr8g0537 231 CDD SANT 10 55 IPR001005 -
Apr8g0537 231 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Apr8g0537 231 CDD SANT 64 106 IPR001005 -
Apr8g0537 231 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0537 Apr-Chr8 4751356 4753292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0537 4 109 MYB Transcription Factor Family AT5G59780 62.264 2.29e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g0537 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0537 K09422 - gmx:100783472 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0537 8 4751356 4753292 Apr8g0537 8 4751356 4753292 ECH