Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0523 ATGGGTAGAGCTCCTTGTTGTGACAAAGCAAATGTTAAGAAAGGGCCATGGAGTCCTGAAGAAGATGAAAAGCTAAAGGAGTACATAGAGAAACATGGTACTGGAGGGAACTGGATTGCCCTCCCACAAAAAGCTGGTTTGAAAAGATGTGGGAAAAGTTGTAGACTCAGATGGCTTAATTATCTCAGACCCAACCTTAAGCATGGTGAGTTTTCAGAAGATGAAGATAGAATAATCTGCACTCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTCAGTTGCCAGGTAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAGAAAAAAGCGATGGGAATGGATCCTTCAGCACTCAAGAAATATCACCAAGTTACCCTTTTATCCATCCTTCAAAACTCAACACCATCTTCATCCTCCTCGTCTTTTCAAGCACAAGAAAGTTCTTTGCGTCCCTTTCAAAATTACCAAGTTAGTAGTGTCTCTATGTTAGGGGGTGAAACTAGTTGCACCTCTTCAGATGGAAGCTGCAATAATCAGATCAATCAGGTCAAAGAAGTAGATCTTGGATATGGTGGTGATGGAACTTTGGTTGACCAAATCGGTACTCTTAGTTACCTCTCTAATGGGTTGGAAGGTACCCAAAAGTTGATGCTCTCCAATGCTGGTAGGGTTAGTGGGTGGACAGTGGAACAAAGTAGAATATGGGGAGAAAATCCATTAGATTATGGTCTAGAAGAAATTAAACAGCTAATAAGCACTAGCAGTTGCAACAACTTGTTTGACGACAAGAAGACAGAGGAAATGGTCATGTACTATTGA 840 0.4107 MGRAPCCDKANVKKGPWSPEEDEKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRIICTLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKAMGMDPSALKKYHQVTLLSILQNSTPSSSSSSFQAQESSLRPFQNYQVSSVSMLGGETSCTSSDGSCNNQINQVKEVDLGYGGDGTLVDQIGTLSYLSNGLEGTQKLMLSNAGRVSGWTVEQSRIWGENPLDYGLEEIKQLISTSSCNNLFDDKKTEEMVMYY* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0523 279 Gene3D - 7 68 - -
Apr8g0523 279 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Apr8g0523 279 SMART sant 13 64 IPR001005 -
Apr8g0523 279 SMART sant 67 115 IPR001005 -
Apr8g0523 279 Gene3D - 69 135 - -
Apr8g0523 279 CDD SANT 16 62 IPR001005 -
Apr8g0523 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Apr8g0523 279 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Apr8g0523 279 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Apr8g0523 279 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Apr8g0523 279 PANTHER OS09G0431300 PROTEIN 1 155 - -
Apr8g0523 279 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr8g0523 279 CDD SANT 70 113 IPR001005 -
Apr8g0523 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Apr8g0523 279 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0523 Apr-Chr8 4628375 4629736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0523 1 119 MYB Transcription Factor Family AT5G57620 87.395 1.79e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g0523 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0523 K09422 - gmx:100794828 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0523 8 4628375 4629736 Apr8g0523 8 4628375 4629736 ECH
Apr4g0217 4 1847186 1848977 Apr8g0523 8 4628375 4629736 PCT