Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0492 ATGTCTACCTCTGCGGCTTCTCTTGCACTTCCCACTCTCACTCTCCGAACCCGACAACCTCTGTGTTCTCCCCAATGTTTCTCTTCTTCACTTTCCCTAACACCTAACTCCAGACCCATCTCCATTTCCACTGTTTTTGTTCCACCAATGTTGTCGTTCTCGTCTCGTTTTGTTCCTCGTGTGGCTGTTTCCTCGGAGTTCGACCAGGAAGAGGATGTCCTCAGCGATGGAGATAGCCCTAGCTTCGCCCCTGACCTTAAACTCTTCGTGGGTAATCTCCCTTTCAGCGTTGACAGTGCTCAACTAGCCGAGCTCTTCGAAAACGCTGGGAATGTGGAGATGGTTGAGGAAGTTGAAGCAGCTGCTCATCAGTTCAATGGTTATGAAATGGAGGGAAGGGCTTTGAGAGTAAATTCTGGACCACCTCCTGCTCGGAATGAGAATTCCCCTCGTTTCAGAGGTCCTTCCAGAGGTGGTGGTGGTCCTTCAGATGAAAGCAACCGTGTTCATGTAGGTAATCTTGATTGGGGTGTTGACAATTTAACACTTGAGACATTGTTTCGCGGAAAAGGAAAGGTCTTGGAAGCAAGGGTAATCTATGACAGAGAAAGTGGAAGATCTAGAGGCTTTGGATTTGTGACTTACAGTAGCCCTGAAGAGGTCAACAGTGCAATTCAGTCCTTAGATGGTGTTGACTTGAATGGCAGAGCTATACGAGTCTCGTTAGCAGATTCTAAGCCCAAGCGGTTTTGA 753 0.4794 MSTSAASLALPTLTLRTRQPLCSPQCFSSSLSLTPNSRPISISTVFVPPMLSFSSRFVPRVAVSSEFDQEEDVLSDGDSPSFAPDLKLFVGNLPFSVDSAQLAELFENAGNVEMVEEVEAAAHQFNGYEMEGRALRVNSGPPPARNENSPRFRGPSRGGGGPSDESNRVHVGNLDWGVDNLTLETLFRGKGKVLEARVIYDRESGRSRGFGFVTYSSPEEVNSAIQSLDGVDLNGRAIRVSLADSKPKRF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0492 250 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 116 - -
Apr8g0492 250 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 115 250 - -
Apr8g0492 250 PANTHER OS02G0815200 PROTEIN 115 250 - -
Apr8g0492 250 PANTHER OS02G0815200 PROTEIN 1 116 - -
Apr8g0492 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 239 IPR000504 GO:0003723
Apr8g0492 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 114 IPR000504 GO:0003723
Apr8g0492 250 SMART rrm1_1 168 241 IPR000504 GO:0003723
Apr8g0492 250 SMART rrm1_1 87 138 IPR000504 GO:0003723
Apr8g0492 250 SUPERFAMILY RNA-binding domain, RBD 150 249 IPR035979 GO:0003676
Apr8g0492 250 SUPERFAMILY RNA-binding domain, RBD 82 164 IPR035979 GO:0003676
Apr8g0492 250 Gene3D - 86 139 IPR012677 -
Apr8g0492 250 Gene3D - 140 249 IPR012677 -
Apr8g0492 250 MobiDBLite consensus disorder prediction 134 168 - -
Apr8g0492 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 245 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0492 Apr-Chr8 4277781 4280273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0492 165 249 Eukaryotic Initiation Factors Gene Family AT1G49760 35.294 2.12e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0492 - - gmx:100786275 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0492 8 4277781 4280273 Apr8g0492 8 4277781 4280273 ECH