Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0487 ATGATTACATTCATGGATTCAAAGGAGAAATCAAAAGAGGTGGAGAGGTGTTTGGATCCTCAGCTATGGCATGCGTGTGCAGGAGGGATGGTGCAGATGCCAGCAGTGAATACTAAAGTGTATTACTTTCCTCAGGGCCATGCTGAGCATGCATGTGGACCAGTTAACTTCAGGGCTTGTCCCAAGGTTCCACCTTTGGTTCCATGCAAAGTGGTAGCTATCAAATACCTGGCTGATCCTGAGACTGATGAGGTCTATGCTAAACTCAGGCTTGTTCCTATGAATACTAATGATGTTGATTATGACCGTGATGCTGTTGGGCCTGAAACTCAGGAAAAGCCTGCTTCATTTGCAAAGACCTTGACCCAATCTGATGCTAACAATGGTGGGGGGTTTTCTGTTCCTAGATATTGTGCCGAGACAATTTTCCCTCGTTTGGATTACTCCGCTGACCCTCCTGTTCAGAACATCCTCGCCAAGGATGTTCATGGTGAAACATGGAAATTCAGGCACATTTATAGGGGCACGCCGAGGCGGCATCTATTGACTACTGGATGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTTCTGAGAGCTGAAAATGGGGATCTATGTGTTGGGATTCGCCGAGCGAAGAAGGGTATTGGTGGTGGACCTGAGGCTTCTTCAGGGTGGAACCCTGCAGGTGGAAATTGTGCCGGGCCTTATGGTGGGTTTTCGCCCTTTTTGAGGGAGGATGAGAGCAGGATCCTCAGAAATGGTAACAGCAATGGGATGAATCCAAGTGTGAGCATGATGGGGAGGGGAAAAGTGAGGCCAGAAGCTGTAATTGAAGCAGCAACTCTTGCCGCCAATAAGCAGCCCTTTGAGGTTGTTTACTTCCCTCGGGCTAGTACTCCCGAGTTTTGTGTGAAGGCCCCATTAATTGAAACAGCACTGCAGATAAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAGACAGAGGACTCTTCGCGAATAAGTTGGTTTATGGGAACGATATCTTCAGTTCAGGTTGCTGATCCTCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAGAATGTAAGAAGAGTGAGCCCATGGCTGGTTGAATTGGTATCAAGCATGCCTGCCATTCATGCTTCCCCTTTCTCACCACCACGGAAGAAACTGAGATTGCCTCAACACCCGGATTTCCCCCTTGATGGCCAGATTCCTGTTCCAACATTTCCCGGCAACCTTCTAGGTCCCAGCAACACCAATCCATTTGGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCAGATCACCTCAATAAAGTGCAGTCAGGTCTACTTCCAGTTGGGTTCCCGCCTCTTGATCATGCTGCTATGCGGATGAGGGTCTCCAATAACCTCATATTGCAAAAGCCCAGGATGAGTGAGAATATCTCTTGCTTACTATCTATGGCAAATTCGACGCAGTCTTCAAAGCAACTGAATGATGGGAAGACAACCGAGCTTGTGCTTTTCGGCCAAAAAATTCTCACAGGGCAACCGATCTCTCAGAGCAGCTCTGGTGATACAGTCTCCCCAGTTCCTACTGGAAACTGTTCATCAGATGGAAATGCTGATAAAGTGACTAATTTTTCTGATGGTTCTGGATCTGCTCTTCATCAACAAGGCCAACACGAACGCTCCTCTTGTGATAGGTTCCAGTGGTATAGGGATAACTGCCAAGAAACTGAGACTAGTTTGGAGACTGGTCACTGTAAAGTTTTTATGGAATCAGAAGACGTTGGGCGGACTATGGACCTCTCGTTGCTCAGGTCATACGATGAACTGAACAGAAAGCTGGCAGACATGTTTGGCCTAGAAAAATCTGAGATGTTAAGTCATGTGCTCTATCGGGATGTAACTGGGGTCGTAAAGCACATTGGCGATGAACCTTTCAGTGACTTCACAAGAACAGCAAAGAGGTTGACAATTCTAATGGATTCCGGAAGCGACAATGTAAGAGTTTAG 2097 0.4707 MITFMDSKEKSKEVERCLDPQLWHACAGGMVQMPAVNTKVYYFPQGHAEHACGPVNFRACPKVPPLVPCKVVAIKYLADPETDEVYAKLRLVPMNTNDVDYDRDAVGPETQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEASSGWNPAGGNCAGPYGGFSPFLREDESRILRNGNSNGMNPSVSMMGRGKVRPEAVIEAATLAANKQPFEVVYFPRASTPEFCVKAPLIETALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSSMPAIHASPFSPPRKKLRLPQHPDFPLDGQIPVPTFPGNLLGPSNTNPFGCLPESTPAGMQGARHAHYGLSLSDHLNKVQSGLLPVGFPPLDHAAMRMRVSNNLILQKPRMSENISCLLSMANSTQSSKQLNDGKTTELVLFGQKILTGQPISQSSSGDTVSPVPTGNCSSDGNADKVTNFSDGSGSALHQQGQHERSSCDRFQWYRDNCQETETSLETGHCKVFMESEDVGRTMDLSLLRSYDELNRKLADMFGLEKSEMLSHVLYRDVTGVVKHIGDEPFSDFTRTAKRLTILMDSGSDNVRV* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0487 698 MobiDBLite consensus disorder prediction 544 588 - -
Apr8g0487 698 Gene3D - 115 219 IPR015300 -
Apr8g0487 698 ProSiteProfiles PB1 domain profile. 612 698 IPR000270 GO:0005515
Apr8g0487 698 CDD B3_DNA 116 217 IPR003340 GO:0003677
Apr8g0487 698 SMART B3_2 117 219 IPR003340 GO:0003677
Apr8g0487 698 PANTHER AUXIN RESPONSE FACTOR 6 689 - -
Apr8g0487 698 Gene3D - 609 696 - -
Apr8g0487 698 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr8g0487 698 SUPERFAMILY DNA-binding pseudobarrel domain 111 218 IPR015300 -
Apr8g0487 698 MobiDBLite consensus disorder prediction 544 587 - -
Apr8g0487 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 689 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr8g0487 698 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Apr8g0487 698 Gene3D - 323 397 - -
Apr8g0487 698 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0487 Apr-Chr8 4196663 4200727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0487 14 698 B3 DNA Binding Superfamily AT4G30080 57.021 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr8g0487 B3 3.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0487 - - gmx:100796522 1229.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0487 8 4196663 4200727 Apr8g1973 8 30358325 30361547 ECH
Apr8g0487 8 4196663 4200727 Apr8g0487 8 4196663 4200727 ECH
Apr8g0487 8 4196663 4200727 Apr2g2198 2 27160873 27164628 ECH
Apr8g0487 8 4196663 4200727 Apr3g1355 3 28061870 28066976 ECH