Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0486 ATGACTACTCGAATTGCACCCGGTGTCGGAGCCAATTTGCTGGGTCAACACTCCGCAGAGAGGAATCAAGATGCCACTGCTTATGTTGGAAATCTCGACCCTCAGATAACTGAGGAGTTACTATGGGAGTTGTTTGTTCAGGCTGGTCCTGTGGTTAATGTGTATGTTCCTAAGGACAGAGTCAGCAACCAACATCAGGGTTATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAACTTTATGGGAAACCAATACGTGTGAATAAGGCATCCCAAGACAAAAAAAGCTTGGATGTTGGGGCAAACCTTTTCATTGGCAATCTTGATCCTGATGTGGATGAAAAACTCTTGTATGATACCTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGAGACAGGGAATTCTCGTGGATTTGGCTTCATTAGCTATGATTCTTTTGAGGCATCTGATTCAGCCATTGAGGCAATGAATGGACAATATCTTTGCAACCGTCAAATTACAGTATCATATGCTTATAAGAAAGACACTAAAGGTGAAAGGCACGGTACCCCTGCAGAGAGAGTTTTGGCTGCAAGTAATCCAAGTGCACAGAAGAGCAGGCCTCATACTTTATTTGCGAGTGGGCCTCCAACACTTCCCGGTGCACAGGCTAATGGCAGCATTGCTGCACCAGTGCCTCCCCGCCCCTTCGCCAATGGGGTTGCTCCAGCTGCTATTCCTGCCCTCCGTCTGCCACCCCCTCAAGCTGCGGCCTTCCAACCTATGTCAGTACCTGGACAACCGGCATGGCACCAACAACAGCCAGGTCAAACCATCATGCCTCCCGTAATGCCTCCACCTCAAGTCCAGCAGTTCAGGCCACCTCACTCTGGTATGCAGATGCCACTACCACCACAAGCTGTTCCTGCTCCTCCAAGGCCTCTTCCACCACCGGCAGTAATGGCAAGTCAGCCACCACCTGTTTGGCGACCACAACCACCGCCACCACCTCAGCAACAGGGTGGACGGCCTTTAGTATATCCTCAGTCCTCAATGCCACCACCGCCACCTCCCAGTAACAGTGCAATGCCACCACCTTAA 1134 0.4929 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVSNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAQKSRPHTLFASGPPTLPGAQANGSIAAPVPPRPFANGVAPAAIPALRLPPPQAAAFQPMSVPGQPAWHQQQPGQTIMPPVMPPPQVQQFRPPHSGMQMPLPPQAVPAPPRPLPPPAVMASQPPPVWRPQPPPPPQQQGGRPLVYPQSSMPPPPPPSNSAMPPP* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0486 377 CDD RRM2_SF3B4 111 193 IPR034159 -
Apr8g0486 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Apr8g0486 377 CDD RRM1_SF3B4 28 100 IPR034158 -
Apr8g0486 377 Gene3D - 112 200 IPR012677 -
Apr8g0486 377 Gene3D - 16 111 IPR012677 -
Apr8g0486 377 PRINTS Proline rich extensin signature 242 258 - -
Apr8g0486 377 PRINTS Proline rich extensin signature 293 314 - -
Apr8g0486 377 PRINTS Proline rich extensin signature 316 332 - -
Apr8g0486 377 PRINTS Proline rich extensin signature 334 351 - -
Apr8g0486 377 PRINTS Proline rich extensin signature 355 377 - -
Apr8g0486 377 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 360 - -
Apr8g0486 377 MobiDBLite consensus disorder prediction 275 377 - -
Apr8g0486 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Apr8g0486 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Apr8g0486 377 MobiDBLite consensus disorder prediction 208 222 - -
Apr8g0486 377 MobiDBLite consensus disorder prediction 290 377 - -
Apr8g0486 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Apr8g0486 377 PANTHER TRANSFORMER-2-RELATED 1 360 - -
Apr8g0486 377 MobiDBLite consensus disorder prediction 194 236 - -
Apr8g0486 377 SMART rrm1_1 26 99 IPR000504 GO:0003723
Apr8g0486 377 SMART rrm1_1 113 187 IPR000504 GO:0003723
Apr8g0486 377 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0486 Apr-Chr8 4182139 4187884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0486 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 34.940 9.69e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0486 K12831 - gmx:100792707 579.711