Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0481 ATGTCTTCCCCTACAAACTTTTATCATAAGTCAGCAGTAAGAGTTCTAAGATATCTCAAAGGAGCACCAGGACAAGGCCTATTCTATCCCACTTCTTCTACATTACAGCTTAAAGCATTTAGTGATTCAGATTGGGGAACTTGTTCAGAGACTCGAAGATCCATCATCGGCTACTGCATCTTCTTAGGAGACTCTCTAATTTCCTGGAAATCCAAGAAGCAATCCACTACATCCAGATCATCGTCTGAAGCTGAGTACAGGGCTCTTGCTTCCACTATGTACTACCCAGATGGAGATAATGATGGAAGCTTTCGTGTATTCACTTATAACCAATTGAAATTAGCCACTAATAATTTTCAGTCCTCATACAAGGTTGGAGAAGGTGGCTTTGGTTCTGTCTATAAGGGGAGGCTTAAGGATGGTTCTTTTGTAGCTGTGAAGGTGCTGTCGGTTGAGGTTGAATCCATGCGAGGAGAGAGAGAATTTGTGGCGGAATTGGCTACACTTGCTAATATAAAGCACCAAAATCTAGTAAGTCTCAAAGGGTGTTGTGTGGAAGGTGTTCATAGATATTTAGTCTATGATTACATGGAGAACAATAGCCTCCACAATACTTTCTTAGCTTCGGAGGAGAGAAGGATGGGATTCAGCTGGGAAACAAGGAAGGAAGTATCCATAGGTGTGGCTCGGGGGCTTGTCTTTCTCCATGAAGAGCTTAAGCCTCATATTGTACACAGAGACATCAAAGCCAAAAATATACTTATTGATCGGAATTTCATACCAAAAGTTTCAGACTTTGGTTTGGCAAAATTGCTAAGAGATGAAGCATCTTACATCAGCACTCGAGTTGCAGGGACATTGGGTTACTTGGCTCCAGAGTATGCTAATTCCGGTCAAGTTTCGCGAAAATCAGATGTTTATAGCTTTGGAGTATTACTTTTACAAATTGTCAGTGGCCTAGCAGTTGTAGATGCCTATCAAGATATTGAACGTTTTATTGTAGAGAAGGCGTGGGCTGCGTATGAAGCTAACAATTTATTAAAGTTGGTGGATCCCATGCTTAATATGAACTTCCCATTGGAAGAAGCCTTAAAATTCCTAAAGGTGGGGCTTCTTTGCGTGCAAGAAACCGCCAAGCTTAGGCCACGAATGTTAGAGGTTGTAGACAAGTTGACCAACAACAATGTTGATATGAAAGATGTTCACATTTCAAAACCAGGTTTTGTTGCTGACCTCAGGAACATCAGAATCAAACAACAAAACTCGTCCCAGGTATCAAGTTCTGCTGGAGCAACCTTTGCAAGCTCAATTTGGAGTACGGTCAATCTTGCCCGTTAA 1338 0.4155 MSSPTNFYHKSAVRVLRYLKGAPGQGLFYPTSSTLQLKAFSDSDWGTCSETRRSIIGYCIFLGDSLISWKSKKQSTTSRSSSEAEYRALASTMYYPDGDNDGSFRVFTYNQLKLATNNFQSSYKVGEGGFGSVYKGRLKDGSFVAVKVLSVEVESMRGEREFVAELATLANIKHQNLVSLKGCCVEGVHRYLVYDYMENNSLHNTFLASEERRMGFSWETRKEVSIGVARGLVFLHEELKPHIVHRDIKAKNILIDRNFIPKVSDFGLAKLLRDEASYISTRVAGTLGYLAPEYANSGQVSRKSDVYSFGVLLLQIVSGLAVVDAYQDIERFIVEKAWAAYEANNLLKLVDPMLNMNFPLEEALKFLKVGLLCVQETAKLRPRMLEVVDKLTNNNVDMKDVHISKPGFVADLRNIRIKQQNSSQVSSSAGATFASSIWSTVNLAR* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0481 445 CDD RNase_HI_RT_Ty1 38 93 - -
Apr8g0481 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Apr8g0481 445 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 96 418 - -
Apr8g0481 445 PANTHER RECEPTOR-LIKE KINASE 96 418 - -
Apr8g0481 445 Gene3D Transferase(Phosphotransferase) domain 1 197 405 - -
Apr8g0481 445 Gene3D Phosphorylase Kinase; domain 1 77 196 - -
Apr8g0481 445 ProSitePatterns Protein kinases ATP-binding region signature. 125 147 IPR017441 GO:0005524
Apr8g0481 445 Pfam Protein kinase domain 120 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0481 445 SMART serkin_6 119 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0481 445 CDD STKc_IRAK 125 393 - -
Apr8g0481 445 SUPERFAMILY Protein kinase-like (PK-like) 101 415 IPR011009 -
Apr8g0481 445 ProSiteProfiles Protein kinase domain profile. 119 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0481 Apr-Chr8 4099166 4105356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0481 107 391 Receptor kinase-like Gene Family AT1G53430 50.523 7.68e-89 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr8g0481 Pkinase 5.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0481 - - gmx:100813945 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0481 8 4099166 4105356 Apr8g0481 8 4099166 4105356 ECH