Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0480 ATGGGTAACATAGGAAGCAGTGGTTCTAACAGCCGCCGGAGACACGGTGGCAGCGGCAGCGGGAGACGGATTCACCCGCCGCCGGTGCCTCCGCAGCCGGAAATCACGGCGAACCGGTTCGCGTACCCTCCCGCCGCCACGCCTTATCACAACTACCCCGGTTACTATCCGCCGCCGACAACCATACCGGCTCCGTTGCCGGCGCCGTACGACCACCATCACCGTCCGGCGGTAGACCCGATGTGGGGGCGTTACGCTCCGCCGCAACCGCTGCTGCCACCTACGCCGTATGTGGAGCATCAGAAGGCGGTTACTATAAAGAACGATGTCAACATCAAGAAGGAGAGTCTTAGGATTGAACCTGATGACGAAAATCCTGGGCGTTTTCTTGTGTCATTTACTTTCGATGCCACCGTTTCTGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGGTGAAGGTTGCACCCTAACCCCAATGAAGGAAGATGTTCTTGCACCCGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAACAGCCAGCCGGAACTGGGATTGATTTTTCAATATTTGAGGAGTCTGAGTTATTGAATGTGGGGGACATGGATGTCTATCCAGTTGCTATCAAAGCAGATGCATCGTCTGGTGACCATGATGATGGATCAAATGAAACTCCAACACCCGGTAATACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCAGGTGAAGGTTATGAAGCAGATCTTATGGGTAAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGATGGGAATGACCCTGGAAAAGAGTGCGTTATATGCTTGTCAGAGCCTAGGGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGTGGATGTGCAAAGGTTTTGAGATTTCAGACAAATAGATGTCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTTGGACCTGAACTTGAACCTCAAACTCAACCTCAACCTCAAGAGTGA 1065 0.4986 MGNIGSSGSNSRRRHGGSGSGRRIHPPPVPPQPEITANRFAYPPAATPYHNYPGYYPPPTTIPAPLPAPYDHHHRPAVDPMWGRYAPPQPLLPPTPYVEHQKAVTIKNDVNIKKESLRIEPDDENPGRFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKEDVLAPVTVNFQQGLGQKFKQPAGTGIDFSIFEESELLNVGDMDVYPVAIKADASSGDHDDGSNETPTPGNTNSQITQAVFEKEKGEFQVKVMKQILWVNGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPELEPQTQPQPQE* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0480 354 MobiDBLite consensus disorder prediction 1 40 - -
Apr8g0480 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 339 IPR013083 -
Apr8g0480 354 ProSiteProfiles Zinc finger RING-type profile. 290 329 IPR001841 -
Apr8g0480 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 345 - -
Apr8g0480 354 MobiDBLite consensus disorder prediction 1 15 - -
Apr8g0480 354 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 289 329 IPR045195 -
Apr8g0480 354 PANTHER MAHOGUNIN 1 345 IPR045194 GO:0061630
Apr8g0480 354 SMART ring_2 290 328 IPR001841 -
Apr8g0480 354 Pfam Zinc finger, C3HC4 type (RING finger) 288 334 - -
Apr8g0480 354 MobiDBLite consensus disorder prediction 215 235 - -
Apr8g0480 354 SUPERFAMILY RING/U-box 289 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0480 Apr-Chr8 4084064 4089574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0480 91 309 C3H Transcription Factor Family AT3G09770 67.111 2.64e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0480 - - gmx:100789032 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0480 8 4084064 4089574 Apr8g0480 8 4084064 4089574 ECH