Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr8g0480 | ATGGGTAACATAGGAAGCAGTGGTTCTAACAGCCGCCGGAGACACGGTGGCAGCGGCAGCGGGAGACGGATTCACCCGCCGCCGGTGCCTCCGCAGCCGGAAATCACGGCGAACCGGTTCGCGTACCCTCCCGCCGCCACGCCTTATCACAACTACCCCGGTTACTATCCGCCGCCGACAACCATACCGGCTCCGTTGCCGGCGCCGTACGACCACCATCACCGTCCGGCGGTAGACCCGATGTGGGGGCGTTACGCTCCGCCGCAACCGCTGCTGCCACCTACGCCGTATGTGGAGCATCAGAAGGCGGTTACTATAAAGAACGATGTCAACATCAAGAAGGAGAGTCTTAGGATTGAACCTGATGACGAAAATCCTGGGCGTTTTCTTGTGTCATTTACTTTCGATGCCACCGTTTCTGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGGTGAAGGTTGCACCCTAACCCCAATGAAGGAAGATGTTCTTGCACCCGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAACAGCCAGCCGGAACTGGGATTGATTTTTCAATATTTGAGGAGTCTGAGTTATTGAATGTGGGGGACATGGATGTCTATCCAGTTGCTATCAAAGCAGATGCATCGTCTGGTGACCATGATGATGGATCAAATGAAACTCCAACACCCGGTAATACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCAGGTGAAGGTTATGAAGCAGATCTTATGGGTAAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGATGGGAATGACCCTGGAAAAGAGTGCGTTATATGCTTGTCAGAGCCTAGGGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGTGGATGTGCAAAGGTTTTGAGATTTCAGACAAATAGATGTCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTTGGACCTGAACTTGAACCTCAAACTCAACCTCAACCTCAAGAGTGA | 1065 | 0.4986 | MGNIGSSGSNSRRRHGGSGSGRRIHPPPVPPQPEITANRFAYPPAATPYHNYPGYYPPPTTIPAPLPAPYDHHHRPAVDPMWGRYAPPQPLLPPTPYVEHQKAVTIKNDVNIKKESLRIEPDDENPGRFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKEDVLAPVTVNFQQGLGQKFKQPAGTGIDFSIFEESELLNVGDMDVYPVAIKADASSGDHDDGSNETPTPGNTNSQITQAVFEKEKGEFQVKVMKQILWVNGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPELEPQTQPQPQE* | 355 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr8g0480 | 354 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Apr8g0480 | 354 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 274 | 339 | IPR013083 | - | |
Apr8g0480 | 354 | ProSiteProfiles | Zinc finger RING-type profile. | 290 | 329 | IPR001841 | - | |
Apr8g0480 | 354 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 345 | - | - | |
Apr8g0480 | 354 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Apr8g0480 | 354 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 289 | 329 | IPR045195 | - | |
Apr8g0480 | 354 | PANTHER | MAHOGUNIN | 1 | 345 | IPR045194 | GO:0061630 | |
Apr8g0480 | 354 | SMART | ring_2 | 290 | 328 | IPR001841 | - | |
Apr8g0480 | 354 | Pfam | Zinc finger, C3HC4 type (RING finger) | 288 | 334 | - | - | |
Apr8g0480 | 354 | MobiDBLite | consensus disorder prediction | 215 | 235 | - | - | |
Apr8g0480 | 354 | SUPERFAMILY | RING/U-box | 289 | 335 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr8g0480 | Apr-Chr8 | 4084064 | 4089574 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr8g0480 | 91 | 309 | C3H Transcription Factor Family | AT3G09770 | 67.111 | 2.64e-103 | 306 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr8g0480 | - | - | gmx:100789032 | 553.903 |