Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0478 ATGGTGCCTCTCCTCTCCACTCCTTACTATATTCTCTCTGCACTTCTTTTCAGGCAATTTCTATCTCCCATGATCAGGGGTCTAGCATCATCGGAAATAACAGAGGAACTGCCAAGTGGACAACATGGAACAAGGAAAAATCTTACCTTGGAAATACTTGGAATAACACAGGAGGAAACAAGAGAAGATTTTGTGAGAATAAACATGCCTCTAACTCCACCTCCAAGAAGAGTGATTTTTTCCCCCTGTCCGAGTCCTAGTTTCCCAAGAAGCAAGGAATCCCCTGGCCCCTCCACATCCAAAAATAGACCAACTATTAAAACCTTTCTTCCCAAACTCAGTTTTAAGTTTCGCAACACAAATTCTGAGATTGAAAAGGCTGCATTCCTAGCACTTGAAGGATCAGTAACAGTGGCACCAAAAAAGCCTCTTCTTTCAAGGACATTATCTCTTATCACACCTAGAGGGAAGAAAACATCATCCTTACCTGTCACCCCAATTGCTCATTCGAATCCAGAATCTGTACATGGAGGGAACATTGCTTATACAGCAACAGCTGTTGAGAAAGGAGTGCAATTACCAATTCATCGTTCCCGTTCAGTCCCTGTGCTTAACAAAGAAGGTAGCTCACCTGTGACGGGTAGCATGTTTCGTGTAGTTCCAACCACACCACGATTGGATGAGAAAATTGCCACAAGAACATGTATGACATCTCCAACTCATGATACTGTTGAAAATGAGGATGGTGGTGAAGATATTCCCGAAGAAGAAGCTGTGTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGCTGAGACTCTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCATTGGCACACAAAGAATGTGCAGTCAAATGGTTTAGAATTAAAGGTAATAGAACATGTGATGTGTGCAAGCAAGAAGTTCAAAACCTACCTGTCACCCTTTTAAGAGTTCAAACTGGTCAGGGAGGTCAGGAAGCTGAGACTTCTCAATACAGAGTTTGGCAGGATGCTCCCATTCTTGTTGTTATCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCTGGTATGGGATCTGGTGCTATTGCCATGTCTCTCCCATTTTCTTGTATATTGGGTCTCCTTGCAAGCATGACAGCTACAACAATGGTGAGGAGAAATCATGTTTGGGTTTATGCAACTGTTCAGTTTGGTCTGGTGGTTCTGGCTGGACATCTTTTCTACTCATTGGTTCATATGCAAGCTGTTCTAGCTATCTTACTTGCTACATTTACTGGATTTGGAAGTGTAATGTGTGGAGCTTCTATTCTTATGGAGATTTTGAAGTGGAGGAGAAGATCAGCATCAGCTTCTCAATCAAATCAACAGCATAGTTCCCAGGAGGCAGTACCACCTGTTCAATCATCTGCAGCTCCTCATCAAGGTCAGATTGATTCTCAACAAACTGAAAGTAATTTGGAAGACACTCCTGTGCAAAGTTGA 1503 0.4238 MVPLLSTPYYILSALLFRQFLSPMIRGLASSEITEELPSGQHGTRKNLTLEILGITQEETREDFVRINMPLTPPPRRVIFSPCPSPSFPRSKESPGPSTSKNRPTIKTFLPKLSFKFRNTNSEIEKAAFLALEGSVTVAPKKPLLSRTLSLITPRGKKTSSLPVTPIAHSNPESVHGGNIAYTATAVEKGVQLPIHRSRSVPVLNKEGSSPVTGSMFRVVPTTPRLDEKIATRTCMTSPTHDTVENEDGGEDIPEEEAVCRICMVELGEGAETLKLECSCKGELSLAHKECAVKWFRIKGNRTCDVCKQEVQNLPVTLLRVQTGQGGQEAETSQYRVWQDAPILVVINMLAYFCFLEQLLVSGMGSGAIAMSLPFSCILGLLASMTATTMVRRNHVWVYATVQFGLVVLAGHLFYSLVHMQAVLAILLATFTGFGSVMCGASILMEILKWRRRSASASQSNQQHSSQEAVPPVQSSAAPHQGQIDSQQTESNLEDTPVQS* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0478 500 PANTHER OS02G0165000 PROTEIN 23 490 - -
Apr8g0478 500 Pfam RING-variant domain 260 307 IPR011016 GO:0008270
Apr8g0478 500 MobiDBLite consensus disorder prediction 456 500 - -
Apr8g0478 500 CDD RING_CH-C4HC3_MARCH 260 308 - -
Apr8g0478 500 ProSiteProfiles Zinc finger RING-CH-type profile. 252 314 IPR011016 GO:0008270
Apr8g0478 500 MobiDBLite consensus disorder prediction 75 105 - -
Apr8g0478 500 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 23 490 - -
Apr8g0478 500 SUPERFAMILY RING/U-box 256 311 - -
Apr8g0478 500 SMART ringv_2 259 308 IPR011016 GO:0008270
Apr8g0478 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 315 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0478 Apr-Chr8 4067752 4074097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0478 257 314 C3H Transcription Factor Family AT2G37950 42.373 3.74e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0478 - - gmx:100787963 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0478 8 4067752 4074097 Apr8g0478 8 4067752 4074097 ECH