Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0476 ATGCAAATGATGCCCGGTGATCCCTTTTCCTTATCCACTTCCATTGGAGGCTTCACTCAAGAACAAAACACAAACCCTAACCCTAAACCTAACCCCCCTCCCAAGAAGAAGAGAAATCTTCCAGGAACGCCAGATCCAGATGCCGAGGTCATTGCTCTTTCTCCAAAGACTCTCATGGCCACGAACCGATTCATATGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCACAATCTTCCATGGAAGCTACGACAGAGATCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGTCCTGAAAAAACCTGCGTCCACCATGACCCAGCAAGGGCACTCGGTGACCTCACGGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGTTCCAAGAAATACGCAGTCCAATCCGATTGGAAAGCTCACACCAAAACCTGTGGCACCAGGGAATACAAATGTGACTGTGGCACCCTCTTCTCCAGAAAGGACAGCTTCATTACGCATAGAGCATTTTGCGATGCCTTGGCTGAAGAGAGTGCAAGGCTCACCTCAGTTGCTACCACAAATCTAAATTTCAAGAGTGAAGAAGGGTCGCAGCATGGTTTGGGGCATGGACTAATTGGAGCGCAGGGTCTTCAAAATGTAGTTGGGATTCCACAGTTTGGTCCACATGGTTTCCGTTTGGATTTTAATGGAATGAGTGCAGAACAACAAAGGCCAAGCTTATCGCTGTGGTTGAATCAGGGAAATCCACATATGAATACTGGTAATAATACTAATCCTTCTGATGTGGGGCCCAATTACATGTCCTCATGCTCTTCTTCAGGTTTGCCTGAGATTGTGCAAATGGCTCAGGCTAATGCCTTGATGGGTTCTTCATCAATAGTGTCTAATTTTGGAGTGCCTGCTGCTTCTAATTCGACTAGTGCAAACCTTTCCCTTTCTTCACTTCCTATTGGGAAAAGAGGAGAAGCAGGTGGAACTGTAGTGGACTTGGCATCTATTTATTCTGAGGGTCAAAACAAGCAATCAAAGCCTGCTTCACCCATGTCAGCAACTGCTCTTCTTCAGAAAGCAGCGCAGATGGGTTCCACAAGAAGCACCAACCCTTCCATCTTCAGTGGTAGTTTTGGAGTGATGAATTCGCCTTCTTCACAAACTACCAGTCTCAATAATAATAATAATAACGGTAGTGCAGGTGCAGCCATGATGCTGGGAAGTAGTACTAGTACTAATACTAATGAGTTTAGTTCGCTGACACATTCATCAAACGGTTTTGACCAACTTGTGATGCAAACCAATGGGCATTTACAAAGTACCGAGCCAGTGAAATTGAAGCTTCATTCAAACGCTGTGGAGCACAATTTGACTAGGGATTTTCTTGGCGTGAGTGGAGGAGGTGCTGCCGCTCAGTTCCTACCCCAAGAACTAGCGAAGTTTGCTTCCATTGGCTCACCAATGGGATTGAGCCAATTCACAAGCAATCAATGA 1539 0.4574 MQMMPGDPFSLSTSIGGFTQEQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVATTNLNFKSEEGSQHGLGHGLIGAQGLQNVVGIPQFGPHGFRLDFNGMSAEQQRPSLSLWLNQGNPHMNTGNNTNPSDVGPNYMSSCSSSGLPEIVQMAQANALMGSSSIVSNFGVPAASNSTSANLSLSSLPIGKRGEAGGTVVDLASIYSEGQNKQSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMNSPSSQTTSLNNNNNNGSAGAAMMLGSSTSTNTNEFSSLTHSSNGFDQLVMQTNGHLQSTEPVKLKLHSNAVEHNLTRDFLGVSGGGAAAQFLPQELAKFASIGSPMGLSQFTSNQ* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0476 512 Gene3D Classic Zinc Finger 118 197 - -
Apr8g0476 512 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Apr8g0476 512 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Apr8g0476 512 MobiDBLite consensus disorder prediction 1 25 - -
Apr8g0476 512 Gene3D Classic Zinc Finger 42 116 - -
Apr8g0476 512 SMART c2h2final6 64 86 IPR013087 -
Apr8g0476 512 SMART c2h2final6 105 135 IPR013087 -
Apr8g0476 512 SMART c2h2final6 140 160 IPR013087 -
Apr8g0476 512 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Apr8g0476 512 MobiDBLite consensus disorder prediction 1 48 - -
Apr8g0476 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Apr8g0476 512 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 500 - -
Apr8g0476 512 PANTHER ZINC FINGER PROTEIN JACKDAW 7 500 IPR033243 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0476 Apr-Chr8 4049454 4052162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0476 1 500 IDZ Gene Family AT5G03150 45.951 3.04e-136 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g0476 zf-C2H2_jaz 7.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0476 K25870 - gmx:100811274 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0476 8 4049454 4052162 Apr8g0476 8 4049454 4052162 ECH