Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0475 ATGAGCGTCATCGACATTCTAACCAGAGTCGATTCCATTTGCAAGAAGTATGACAAATATGACGTCGATAAGCACAAGGATCCCAATGTCTCCGGCGACGATGCCTTTGCCAGACTCTACGCCGTCGTTGATGCCGACATCGAGGCCTTGCTTCAGAAAGCAGAAACCGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTAGCGATCAATGCGGAGATTCGTCGTACAAAGGCTCGGTTGCTCGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGGTAAAGGGGCTTTCATCGCAAGAATTTGCTGCCCGTAATGACTTGGTTCTTGCATTGCCGGATAGAATCCAAGCTATCCCAGATGGGACTCCTGCTGGTCCAAAACAAACTGGAGGCTGGGCTGCTTCTGCCTCACGTCCTGAAATTAAGTTTGATTCAGATGGGCGATTTGATGATGAATACTTCCAACAAACTGAGCAATCGAGTCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGGATCAAGGTTTGGATATGATTGCTGAAGGATTGGATACCTTGAAAAACATGGCAAGTGATATGAATGAGGAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAGGTGGACAAGGCATCTTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAGCTTCGATCCAGTAGAAACTTTTGTATCGATATTGTTTTGTTGATTATAATTTTGGGAATTGCCGCTTACTTATACAATGTGCTTAAGAAGTGA 798 0.4398 MSVIDILTRVDSICKKYDKYDVDKHKDPNVSGDDAFARLYAVVDADIEALLQKAETASKEKGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPDRIQAIPDGTPAGPKQTGGWAASASRPEIKFDSDGRFDDEYFQQTEQSSQFRQEYEMRRMKQDQGLDMIAEGLDTLKNMASDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0475 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Apr8g0475 265 PANTHER SYNTAXIN-73 1 261 - -
Apr8g0475 265 SMART tSNARE_6 165 232 IPR000727 -
Apr8g0475 265 CDD SNARE_Qc 175 230 - -
Apr8g0475 265 SUPERFAMILY SNARE fusion complex 163 230 - -
Apr8g0475 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Apr8g0475 265 PANTHER SYNTAXIN 1 261 IPR045242 -
Apr8g0475 265 Gene3D - 170 231 - -
Apr8g0475 265 Pfam SNARE domain 207 256 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0475 Apr-Chr8 4032032 4035648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0475 1 264 SNARE and Associated Proteins AT3G09740 79.323 1.04e-159 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0475 K08506 - gmx:100819272 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0475 8 4032032 4035648 Apr8g0475 8 4032032 4035648 ECH