Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0474 ATGGGGCATAGACATTTATATAGCACATCTCCAATGTTTGAGGGTGAACCTGACCAGAACTGGAATCATATGCATACTGATCAACAATATGTGCACCTTGGTAGGACTACTGCCTCAGACAATGGTTCATTTATTTATCCTTTGGAGAATATGTCGATAGATAGCATTTCTTTTCCATCTCATTGGAACTCTGTGACAAGGTCAAATGGATATCCATCCACAAGTCTCAACGTTGAAGGACCCCCTCATCAACCAGATGCATCGGGCACTTCTCATGATCATATTATGCATTCATCAAGTGCTGGAACCTTTTTTTCAGCGTCTGAAAATTATGCACACCAGCCTTCTAATTCCAATTATGACAGACAAGCATTCTCTGTTATTGATGGTGGTTTTGTTGATCTTACAATGGGAAATGGACGAGTGCCTCACAAGCGAAAGAGCCCTGGAAACCCTTCAGTCTGTGAGAGCGGTAGTACAAGTAGATACTTTAATGCTGGAAATGCAGCTGATCGTCCTTCATCTTCAGAATTACGGCCAGAGAAACCAAATGTGGATTCTCTATATATGTCCTGGGATCATGTTAATATGGCACCCACATTCAGAGGTAGCAGCCTTTCGATTCGGGGTGAGGGCTCTTCAAGGAATGTGAGGAGCCGTTCTTCACTTGATTTGGAACCCAACCTGGCTAGAACCCATTTATCAAGTACTCATTCACACAACCCATACTCTGCTGGTCCACCAATTGACCATTCTAGCACTGTGGATCTTTCAACTCAACCTCCTGGCACTTTGACAAGGGATTGGAGCCAAATGAACATGTGTCCTGCTCATGGAAGAGTTTTATCATCAGATGCAAATGCTTTTAATCATGAAGCAAGTCATTTCCTTATTGGAAGTGGTTCTAGTAATGCTCCTGTAGATGTTGGGGTTTTTAATAATGAATTTGGTACAGGCAGAAATCCTAGTGCTCCTCAATGTTTTCAGAATAATTTGACTCAAACTGCTAGGGGAGTTCGCAGTAACTACTCTCAAAGATCTGCTCCAACTTTTAGGGCTTCTTCAAGCTTTCGCTTGGGTCATGTGGCACCTTCTGATGATGGGTTGCATATGGTGGCTGAAAGTTACTCTTCTAGGCATCTTAGGCCATTGACTACCATAGGTTGGCGGAACAGTGATAGAAACGGAAGGTCAAGGATGCCTAGTGATAGATATCGATCATTGGCTGATGAGGTTGGGTTCAATGATCGATTTTCCTCAGAGGGTTTCATGATTGTTGATCGCACTTCACTGTATAGTTCTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTTGGAGAGAGAATTGGCCATGTGAGCACAGGTTTGTCTGAGGATTTGATTTCCAAACATTTGACAGAAACAATATACTGTTCATCTGATCCAAGTCAAGAAGAAGGAAGTTGTGCGATCTGTCTGGAAGAATACAAGAACATGGACGATGTTGGGACACTGAAAAGTTGTAGACATGACTACCATGTGAGTTGCATTAGGAAGTGGTTATCTATGAAGAACGTATGTCCAATCTGCAAAGCTTCTGCTTTGCCCGAGGACATGAACGATAAATAA 1650 0.4242 MGHRHLYSTSPMFEGEPDQNWNHMHTDQQYVHLGRTTASDNGSFIYPLENMSIDSISFPSHWNSVTRSNGYPSTSLNVEGPPHQPDASGTSHDHIMHSSSAGTFFSASENYAHQPSNSNYDRQAFSVIDGGFVDLTMGNGRVPHKRKSPGNPSVCESGSTSRYFNAGNAADRPSSSELRPEKPNVDSLYMSWDHVNMAPTFRGSSLSIRGEGSSRNVRSRSSLDLEPNLARTHLSSTHSHNPYSAGPPIDHSSTVDLSTQPPGTLTRDWSQMNMCPAHGRVLSSDANAFNHEASHFLIGSGSSNAPVDVGVFNNEFGTGRNPSAPQCFQNNLTQTARGVRSNYSQRSAPTFRASSSFRLGHVAPSDDGLHMVAESYSSRHLRPLTTIGWRNSDRNGRSRMPSDRYRSLADEVGFNDRFSSEGFMIVDRTSLYSSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKHLTETIYCSSDPSQEEGSCAICLEEYKNMDDVGTLKSCRHDYHVSCIRKWLSMKNVCPICKASALPEDMNDK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0474 549 MobiDBLite consensus disorder prediction 73 96 - -
Apr8g0474 549 MobiDBLite consensus disorder prediction 202 269 - -
Apr8g0474 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 542 IPR013083 -
Apr8g0474 549 ProSiteProfiles Zinc finger RING-type profile. 496 538 IPR001841 -
Apr8g0474 549 MobiDBLite consensus disorder prediction 1 21 - -
Apr8g0474 549 SMART ring_2 496 537 IPR001841 -
Apr8g0474 549 MobiDBLite consensus disorder prediction 152 172 - -
Apr8g0474 549 MobiDBLite consensus disorder prediction 139 182 - -
Apr8g0474 549 Pfam Ring finger domain 495 538 IPR001841 -
Apr8g0474 549 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 545 - -
Apr8g0474 549 SUPERFAMILY RING/U-box 489 542 - -
Apr8g0474 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 545 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0474 Apr-Chr8 4018747 4024801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0474 1 544 C3H Transcription Factor Family AT2G37150 42.086 3.68e-110 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0474 - - aprc:113871176 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0474 8 4018747 4024801 Apr8g0474 8 4018747 4024801 ECH