Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0473 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCTTGGAGGTGGAAAGTTCCGACACTATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATTCCACCAGACCAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTAGAAGACGGTCGCACGCTTGCCGACTACAACATCCAGAAGGAGTCCACACTCCACCTCGTCCTCCGCCTCCGCGGCGGCATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACCATCACGCTCGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCGCCGGATCAGCAGCGCTTGATCTTCGCCGGAAAGCAATTGGACGATGGAAGAACCCTCGCCGATTACAACATCCAGAAGGAGTCGACGCTCCATCTGGTGCTTCGCCTACGTGGAGGAATGCAGATCTTCGTGAAGACGCTTACAGGAAAGACGATTACCCTCGAGGTTGAGAGTTCTGATACTATTGATAATGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCACCGGACCAACAGCGTTTGATCTTCGCAGGGAAGCAGCTTGAGGAAGGACGCACTCTTGCAGATTATAATATTCAGAAGGAATCCACTCTTCACCTTGTTCTTAGGCTCCGTGGTGGCCGTGATTGA 693 0.531 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGRD* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0473 230 Gene3D - 1 77 - -
Apr8g0473 230 Gene3D - 78 153 - -
Apr8g0473 230 Gene3D - 154 230 - -
Apr8g0473 230 PANTHER - 73 228 - -
Apr8g0473 230 PANTHER - 1 156 - -
Apr8g0473 230 PRINTS Ubiquitin signature 11 31 IPR019956 -
Apr8g0473 230 PRINTS Ubiquitin signature 32 52 IPR019956 -
Apr8g0473 230 PRINTS Ubiquitin signature 53 74 IPR019956 -
Apr8g0473 230 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Apr8g0473 230 SMART ubq_7 1 72 IPR000626 GO:0005515
Apr8g0473 230 SMART ubq_7 153 224 IPR000626 GO:0005515
Apr8g0473 230 SMART ubq_7 77 148 IPR000626 GO:0005515
Apr8g0473 230 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Apr8g0473 230 CDD Ubl_ubiquitin 77 152 - -
Apr8g0473 230 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Apr8g0473 230 PANTHER UBIQUITIN 73 228 - -
Apr8g0473 230 PANTHER UBIQUITIN 1 156 - -
Apr8g0473 230 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Apr8g0473 230 CDD Ubl_ubiquitin 1 76 - -
Apr8g0473 230 CDD Ubl_ubiquitin 153 228 - -
Apr8g0473 230 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Apr8g0473 230 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Apr8g0473 230 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Apr8g0473 230 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Apr8g0473 230 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Apr8g0473 230 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Apr8g0473 230 SUPERFAMILY Ubiquitin-like 152 229 IPR029071 -
Apr8g0473 230 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0473 Apr-Chr8 4016878 4017951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0473 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.75e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0473 - K08770 zju:107412950 442.965