Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0455 ATGGCCGATACCCCCGCGAGTCCCGCCGGCGGTGGCAGCCACGAGAGCGGCGACCACAGCCCCCGCTCTAATTTCCGCGAGCAGGACCGTTTTCTCCCCATCGCCAACATTAGCCGCATCATGAAGAAAGCGCTACCTCCTAACGGAAAGATCGCTAAGGACGCAAAAGAAACCGTTCAGGAATGCGTCTCTGAGTTCATCAGCTTCATCACCAGCGAGGCGAGCGACAAGTGCCAGAGAGAGAAGAGGAAGACTATTAACGGCGACGATTTGCTTTGGGCTATGGCCACTCTCGGTTTCGAAGATTACATCGATCCCTTAAAGATTTACCTCGGCGCTTACAGAGAAATTGAGGGTGATTCCAAGGGTTCGGCCAAGGGTGGAGATGCATCTGCTAAGAAGGATGTTTATCCGAGTCCTAATTCCCAGCTTGTTCATCAAGGTTCTTACTCACAAGGCGTTAATTACTCGAATTCTCAGCCCCAGGCACAACATATGATGGTTCCCATGCAAGGCCCAGAGTAG 525 0.5257 MADTPASPAGGGSHESGDHSPRSNFREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLGAYREIEGDSKGSAKGGDASAKKDVYPSPNSQLVHQGSYSQGVNYSNSQPQAQHMMVPMQGPE* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0455 174 SUPERFAMILY Histone-fold 28 150 IPR009072 GO:0046982
Apr8g0455 174 Gene3D Histone, subunit A 18 154 IPR009072 GO:0046982
Apr8g0455 174 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Apr8g0455 174 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Apr8g0455 174 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Apr8g0455 174 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 159 - -
Apr8g0455 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr8g0455 174 MobiDBLite consensus disorder prediction 136 166 - -
Apr8g0455 174 MobiDBLite consensus disorder prediction 1 28 - -
Apr8g0455 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Apr8g0455 174 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Apr8g0455 174 MobiDBLite consensus disorder prediction 121 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0455 Apr-Chr8 3885122 3888528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0455 1 174 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.444 2.02e-86 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr8g0455 CBFD_NFYB_HMF 6.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0455 K08065 - gmx:100820170 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0166 4 1380659 1384260 Apr8g0455 8 3885122 3888528 PCT