Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0438 ATGGAAGAAACAACAACAACCATCATGGCTGCACTCTCCACCCTCACTCCTTCCAAGTTCTCAGATCTTACCCACTCCATTCTCTCAGCCACCCACCACCACAATCACCGCCTCTCTACCCTCCTCTCTTCCCCAACTCTTTTTTCTTTAACGCTTCACCATCTTCACTCTCTCTCTCTCCCCCAAAAGACCCTTCTCATTGCCCGCCACCTCCTCTCATGTCTCCACCACCTCACCCGCCACATCCAACCACACAGCGCCACGTCACCGCCGCTTCCTCCGCCGTTGTCCACCGCCATCAGGCAGCGTGAGCTCGACGCCGTTTTGCTCCTCCTTTTGCTCTGCGAAACACACAATCACACTCCAGAAGCCCTCGACGCACCCTTTTGCGATTGGAGGGGAAAGTTGATCAACCTTTTCACTGAGACATTGCTGACGCTTTCTTGTTCTCCTTCTGCACCACCCCTTGGGGCGTGTGAAGGGACGATCTTGATTCCCTTCGTTGAGACGGTGAGCCGGTGCTGGAGACTGGTGGGTTCGCTGGGTTGTGGAGGCGGTGAAGGGAAGGAAGTGAGGGAGGTGGCAGCGTCGGCGGCGACCGTGGTGGCACTGCCGGCGATGGAGGTGATGGTGGGTGGGAGAGAGTGCGTGATATGCAAAGAGGAGATGAAAATAGGGAGGGACGTGTGTGAGTTGCCATGCCAGCATTTGTTTCATTGGATGTGCATTTTGCCGTGGCTGGGTAAGAGGAACACGTGTCCTTGCTGCAGGTTTCGGTTACCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTCTGGGAAGTCTTGGTTAAAATGGGTACCAAAGGATAG 852 0.5528 MEETTTTIMAALSTLTPSKFSDLTHSILSATHHHNHRLSTLLSSPTLFSLTLHHLHSLSLPQKTLLIARHLLSCLHHLTRHIQPHSATSPPLPPPLSTAIRQRELDAVLLLLLLCETHNHTPEALDAPFCDWRGKLINLFTETLLTLSCSPSAPPLGACEGTILIPFVETVSRCWRLVGSLGCGGGEGKEVREVAASAATVVALPAMEVMVGGRECVICKEEMKIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKMGTKG* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0438 283 Pfam Ring finger domain 215 257 IPR001841 -
Apr8g0438 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 280 - -
Apr8g0438 283 ProSiteProfiles Zinc finger RING-type profile. 216 257 IPR001841 -
Apr8g0438 283 SUPERFAMILY RING/U-box 210 262 - -
Apr8g0438 283 SMART ring_2 216 256 IPR001841 -
Apr8g0438 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 280 - -
Apr8g0438 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 263 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0438 Apr-Chr8 3720516 3726008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0438 2 278 C3H Transcription Factor Family AT5G02750 51.568 1.56e-83 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0438 - - pvu:PHAVU_007G161400g 355.525