Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0425 ATGAACTTGCTGACTGTTTATCAAAATTTGGAGTTATTTTTTATTTTTACTGAAGATGATGGACCGGGATCGCTACGTGACGCGTGTCGCAGAAAAGAACCGCTGTGGATTGTGTTTGAGGTTTCGGGTACTATTCATCTCTCATCGTACTTGAGTGTGTCATCTTACAAAACTGTTGATGGTCGTGGCCAAAGGATTAAACTAACGGGGAAAGGTTTAAGGCTTAAGGAATGCGAACACGTAATAATTTGCAATTTGGAGTTAGAAGGAGGCAGAGGGGCTGATGTTGATGCCATTCAGATCAAACCCAATTCCAAACACATATGGATAGACCGTTGCACTCTTAGTGATTTTGATGATGGGCTTATAGATATCACAAGAGAAAGCACTGATATTACTATTTCTAGGTGTCACTTTTCTCAGCATGACAAAACTATGCTCATTGGGGCTGATCCCTCGCATGTTGGTGATAGATGCGTGAGGGTCACTATACACCATTGTTTTTTCAATGGGACTCGACAGAGGCACCCTCGTGTTAGGTTTGCAAAGGTGCATCTCTACAATAATTACACCCGAAACTGGGGCATTTATGCTGTTTGTGCAAGTGTGGAATCCCAGATTTTCTCGCAACATAATATCTATGAAGCAGGACAGAAGAAGGTGGCATTCAAGTATCTTTCTGAGAAGGCAGCAGATAAGGAAGTGGGAGCAACTGGTCACATAAGGTCTGAAGGAGACTTATTTATAAATGGTGCTCAACCAGGGTTAATGACTGAGAATGTTGGGTGCAACATGTTTCACCCTAGTGAATACTATCCAACGTGGACAGTGGAACCTCCTACAGATGATCTAAAGCATGTTCTTCATCACTGCACTGGATGGCAATCTGTTGTGAGGCCAGCAGATCAAACAGTTTGCACAGAATAG 927 0.4261 MNLLTVYQNLELFFIFTEDDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLELEGGRGADVDAIQIKPNSKHIWIDRCTLSDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHVGDRCVRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLSEKAADKEVGATGHIRSEGDLFINGAQPGLMTENVGCNMFHPSEYYPTWTVEPPTDDLKHVLHHCTGWQSVVRPADQTVCTE* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0425 308 PRINTS Pollen allergen Amb family signature 14 39 IPR018082 -
Apr8g0425 308 PRINTS Pollen allergen Amb family signature 50 66 IPR018082 -
Apr8g0425 308 PRINTS Pollen allergen Amb family signature 197 216 IPR018082 -
Apr8g0425 308 PANTHER PECTATE LYASE 18-RELATED 17 300 IPR045032 GO:0030570
Apr8g0425 308 SMART amb_all 42 220 IPR002022 -
Apr8g0425 308 PANTHER PECTATE LYASE 17 300 - -
Apr8g0425 308 Pfam Pectate lyase 51 213 IPR002022 -
Apr8g0425 308 SUPERFAMILY Pectin lyase-like 21 302 IPR011050 -
Apr8g0425 308 Gene3D - 13 282 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0425 Apr-Chr8 3630842 3633401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0425 1 305 Polysaccharide Lyase AT3G55140 74.754 1.41e-178 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0425 K01728 - gmx:100814368 558.525