Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0416 ATGGTAGCCATTTTGAAGAGACAAAGAGAGAACCAAGAAAAAGAGAGCATAGATTTGGCCAATAGTTTGATGCTACTCTCTCGTGTTCAACAAAGCAAACCCTTAATGAAAAGTTATGCTCCAATGGAGTTTGAGTGCAAGACGTGTAACCGCAAGTTCTCATCATTTCAAGCCCTTGGTGGCCATAGGGCTAGCCACAAGAAGCCCAAGTTTGATGGAGAAGATCTAAGAGCTGAGGCCAAGGCTCTTAGCTTGTGGAATAAGCCCAAAATGCATGAGTGTTCCATTTGTGGCATGGAATTCTCTCTGGGTCAGGCACTAGGAGGACACATGAGGAAGCATAGGGGTGCCATCAATGAAGGGTTTTCTTCTATAACCCATGCTATTGAGAAAGCCCCGGTTCTCAAAAGATCGAATAGCAAAAGGGTTATGAGCTTGGACTTGAACTTGACTCCTTTGGAAAATGACTTGCAATTGTTGTTTGGAAAGAAGGCACCTCAAGTTGATCTTTCTTTATTTGTTATTATTGATTTGTTGAATTTAGGGGACGATTCGCAAATAGCTATTCAACTGTGGTTTGGTGAATTTGTGACTTCGTTCGTAGCCATGAAGAGACCGAGAGATGAAGGAGTAAACAGCATAGATTTGGCAAATTGTTTAATCCTGCTCTCTCATCCCAGCAGAGAAAGCAAACCCAAGAAACGTTTAGGCCCTGAAGAATTTAAGTGTAGCACATGTAACCGTAAGTTCTCTTCATTTCAAGCCCTTGGTGGCCACAGAGCTAGCCACAAGAAGCCCAAACTAGAGGGGAAAGAACTCAAAGAACAAGACAAAGCTCTTCTGAGCTTATGGAATAAGCCCAAAACCCACGAGTGTTCCATTTGTGGTTTGGAATTCGCTCTGGGCCAGGCACTGGGTGGACACATGAGAAAGCACAGAATTGTTGCCAACGAAGGGTTTTCTTCTATAAACCAGGTTGTTGCTAAAGTCCCAGTTATGAAAAGGTCCAATAGTATGAGGTTTATGTTCTTGGACTTGAACTTAACTCCTCTGCAGAATGACTTGAAGTTATTGTTTGGAAACATGGCACCCAAAGTCGATTCCTTCGTCTGA 1113 0.4295 MVAILKRQRENQEKESIDLANSLMLLSRVQQSKPLMKSYAPMEFECKTCNRKFSSFQALGGHRASHKKPKFDGEDLRAEAKALSLWNKPKMHECSICGMEFSLGQALGGHMRKHRGAINEGFSSITHAIEKAPVLKRSNSKRVMSLDLNLTPLENDLQLLFGKKAPQVDLSLFVIIDLLNLGDDSQIAIQLWFGEFVTSFVAMKRPRDEGVNSIDLANCLILLSHPSRESKPKKRLGPEEFKCSTCNRKFSSFQALGGHRASHKKPKLEGKELKEQDKALLSLWNKPKTHECSICGLEFALGQALGGHMRKHRIVANEGFSSINQVVAKVPVMKRSNSMRFMFLDLNLTPLQNDLKLLFGNMAPKVDSFV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0416 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Apr8g0416 370 PANTHER ZINC FINGER PROTEIN ZAT5 203 365 - -
Apr8g0416 370 PANTHER ZINC FINGER PROTEIN ZAT5 5 167 - -
Apr8g0416 370 SMART c2h2final6 290 312 IPR013087 -
Apr8g0416 370 SMART c2h2final6 241 263 IPR013087 -
Apr8g0416 370 SMART c2h2final6 44 66 IPR013087 -
Apr8g0416 370 SMART c2h2final6 92 114 IPR013087 -
Apr8g0416 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Apr8g0416 370 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Apr8g0416 370 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 203 365 - -
Apr8g0416 370 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 5 167 - -
Apr8g0416 370 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Apr8g0416 370 ProSitePatterns Zinc finger C2H2 type domain signature. 292 312 IPR013087 -
Apr8g0416 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Apr8g0416 370 SUPERFAMILY beta-beta-alpha zinc fingers 90 263 IPR036236 -
Apr8g0416 370 SUPERFAMILY beta-beta-alpha zinc fingers 287 313 IPR036236 -
Apr8g0416 370 Pfam C2H2-type zinc finger 92 116 - -
Apr8g0416 370 Pfam C2H2-type zinc finger 44 69 - -
Apr8g0416 370 Pfam C2H2-type zinc finger 241 266 - -
Apr8g0416 370 Pfam C2H2-type zinc finger 290 314 - -
Apr8g0416 370 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Apr8g0416 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 312 IPR013087 -
Apr8g0416 370 Gene3D Classic Zinc Finger 42 114 - -
Apr8g0416 370 Gene3D Classic Zinc Finger 239 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0416 Apr-Chr8 3542186 3547761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0416 203 367 C2H2 Transcription Factor Family AT2G37430 45.556 9.92e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g0416 zf-C2H2_6 7.9e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0416 - - aprc:113870747 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0127 4 1106070 1106739 Apr8g0416 8 3542186 3547761 PCT