Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0407 ATGGGAGAAGAAGCGGGTTGTGTGCAAGCATTGGAAGAAGGAAGGAAGGAAAACAATGAGGAAGCAAGGACTGAGCTGAAGCGTGACTATCACCAATGCGTTGCTGATAGTGAACCTCACCTGTCTCCGAATAAGAAACAAGCAAAAGAAGTTTCGAATGATGAAGTGCGCTCTGAGGTTTCCAATCCCAATGTTTCTGCCACAGAGCAAGCACTAACTTTTCAAGATATTAGTAGCCAACCAACTGAATCTGCGAATGTTAACCATGCAGAGTGTGGGGAACTAACGTCTACTTGTTTGGAGAATTCAAGTTCTGATGAAACTTTGAGCGATGAAACTGGTAACCAGGATAACAATAATACTTCTCAGAATGATAAGGACACGAGTAGCGCTGCGATGACGTCCTGTGTAGTGCTGGAAATCCCCAAACATGCTAGTTCATCTGGGATCAGGAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATTACCAATCACATACTCCTTTGTTTCGTCCTGCTTTCTTTACTGAAGGAAACCGCTTTGGGTTTCATGGGGACGATGAAGAGTATTTGGCAAAGGATTATTGCAATAGTGGATTGTTAGAAAGCTCGTGTGGAATGGGACAAGTTCGTGATGGAGATTTGGACTTGTACGCTCGCAATATGGAATTGAAAATGTCGAAGAAAGTAGTCCCCAACTGCTACCCTACGAATGTCAAAAAGCTGTTATCAACTGGCATCCTGGACGGAGCTATAGTGAAGTACATTTACAACCCCAGCAAGGTTGAGCTACCGGGGATTATTGATGGCGGCGGATATTTGTGTGGCTGTTCAGCGTGTAATTACTCTAGAGTGCTTAGTGCCTATGAGTTTGAGCAACATGCTGGTGCCAAGACTAGACATCCTAATAATCATATATTCCTGGAAAATGGAAGACCAATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGCATACTGGATGAGGTTATAAAGAATGTGGCTGGTGCATCTGTGAACGAGGAGTCCTTCCAGCTCTGGAAAGAAAGTCTTCTACAAAGCAATGGCAGGGTTCAGGCTTATAAAAATTATAGTACCAAGCTTGTTGGCTTGCCTCATACAAACATAAGTCAATCTGTAGAAAGTACAAGTCACTTGTCATCTTTGCATACCCCAAGTCATTTTGAGCAGCAAATGTATGTGAACCAGATAACTGACGAATGGAGACGTGCGGTGAAGAAGTCATGCTCCTACGCTTCTAACTCAGGTGTGTTGCTGAAGAGAAGTGCTGATGGTTGCACTAAGAGAAGCAGGGACAACGATTTACACAGGTTACTTTTTATGCCAAATGGACTACCGGATGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAACTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTGGTTGTTGTGATATAGAGATAAGCCCTTCACAGTTTGAGGCTCATGCTGGAATGGCTGCTAGGCGTCAACCTTATCGACACATTTATACTTCCAATGGATTAACACTTCATGATATAGCTCTCTCTTTGGCCAATGGTCAAAACCTTACCACCGGAGACAGTGATGATATGTGTGCAGTATGCGGTGATGGAGGGGATTTGATTCTATGCAATGGATGCCCTAGGGCCTTTCATGCAGCCTGCTTGGGTTCACAGTGTGTTCCAGATAGTAATTGGCAATGTCTAAATTGTAGAGATAATGCTGTTAATGGAAGAGAATCTTCTATTGTGAGGCCAATCATGATACGGTTGACACGGGTTGATAAAACTCCAGAGTTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGAGCGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTACCACGTTGGATGCTTGCGTGACATTGGGTTATGTGAGTTGCAAGAGCTGCCAAAGGATAAGTGGTTTTGCTGTGATGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTGCTGCTGGAGCAGACATTATACCAGCTTCCTTGTCAGAATCACTAGTCAGGAAGCATGAGGAGAAGGGATTATGTACCTATGGAGCTGTGAACGACATTCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCTGAGCATTTACCATTGCTTTCACGAGCTGCTGCTATTTTTCGAGAGTGTTTTGATCCCATTGTTGCAGTATCTGGTCGGGATTTGATTCCTGTTATGGTCTACGGGAGAAATATTTCTGGCCAAGAATTTGGGGGGATGTATTGCATTGTTTTAATTTTGAATTCTGTTGTAGTATCTGCTGGGCTTCTTAGGATTTTTGGCCGTAAAGTTGCTGAGCTTCCACTGGTTGCTACAAGCAGAGAACATCAAGGAAAAGGTTATTTTCAAGTGTTATTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTTCCTGCTGCCGGGGATGCTGAGTCAATTTGGACCAAGAAATTAGGCTTCCGAAAAATGAGTGAAGATCAATTATCCAAATATCTCAGAGAGGTGCAGCTAACCCTCTTCAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCTGGCTATAGATTGA 2661 0.4265 MGEEAGCVQALEEGRKENNEEARTELKRDYHQCVADSEPHLSPNKKQAKEVSNDEVRSEVSNPNVSATEQALTFQDISSQPTESANVNHAECGELTSTCLENSSSDETLSDETGNQDNNNTSQNDKDTSSAAMTSCVVLEIPKHASSSGIRKITFKFSKKKEDYDYQSHTPLFRPAFFTEGNRFGFHGDDEEYLAKDYCNSGLLESSCGMGQVRDGDLDLYARNMELKMSKKVVPNCYPTNVKKLLSTGILDGAIVKYIYNPSKVELPGIIDGGGYLCGCSACNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGASVNEESFQLWKESLLQSNGRVQAYKNYSTKLVGLPHTNISQSVESTSHLSSLHTPSHFEQQMYVNQITDEWRRAVKKSCSYASNSGVLLKRSADGCTKRSRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGSQCVPDSNWQCLNCRDNAVNGRESSIVRPIMIRLTRVDKTPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELQELPKDKWFCCDDCNRIYVALQNSVAAGADIIPASLSESLVRKHEEKGLCTYGAVNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAVSGRDLIPVMVYGRNISGQEFGGMYCIVLILNSVVVSAGLLRIFGRKVAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKYLREVQLTLFNKTSMLEKTVQLAID* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0407 886 ProSitePatterns Zinc finger PHD-type signature. 542 581 IPR019786 -
Apr8g0407 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 673 IPR013083 -
Apr8g0407 886 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 770 856 IPR016181 -
Apr8g0407 886 CDD PHD1_AIRE 541 581 - -
Apr8g0407 886 Gene3D - 712 880 - -
Apr8g0407 886 SUPERFAMILY FYVE/PHD zinc finger 612 668 IPR011011 -
Apr8g0407 886 ProSitePatterns Zinc finger PHD-type signature. 615 670 IPR019786 -
Apr8g0407 886 MobiDBLite consensus disorder prediction 100 129 - -
Apr8g0407 886 SMART PHD_3 614 671 IPR001965 -
Apr8g0407 886 SMART PHD_3 541 582 IPR001965 -
Apr8g0407 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 534 591 IPR013083 -
Apr8g0407 886 MobiDBLite consensus disorder prediction 1 68 - -
Apr8g0407 886 ProSiteProfiles Zinc finger PHD-type profile. 539 584 IPR019787 -
Apr8g0407 886 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 723 873 IPR000182 GO:0016407
Apr8g0407 886 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 6 882 - -
Apr8g0407 886 MobiDBLite consensus disorder prediction 9 35 - -
Apr8g0407 886 Pfam Tify domain binding domain 269 323 IPR032308 -
Apr8g0407 886 Pfam Tify domain binding domain 475 524 IPR032308 -
Apr8g0407 886 CDD NAT_SF 774 835 - -
Apr8g0407 886 MobiDBLite consensus disorder prediction 42 56 - -
Apr8g0407 886 SUPERFAMILY FYVE/PHD zinc finger 537 586 IPR011011 -
Apr8g0407 886 PANTHER AUTOIMMUNE REGULATOR 6 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0407 Apr-Chr8 3459085 3469177 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0407 1 881 PHD Transcription Factor Family AT3G53680 52.053 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0407 - - gmx:100808999 1608.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0407 8 3459085 3469177 Apr8g0407 8 3459085 3469177 ECH