Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0401 ATGGCCGGCAAAGGAGAGGGTCCAGCTATCGGAATCGATCTCGGAACTACATATTCATGCGTCGGTGTATGGCAACATGATCGCGTTGAGATCATCGCCAACGACCAAGGTAACAGAACGACGCCGTCTTACGTCGGCTTCACTGACACTGAGCGTCTCATTGGTGATGCTGCCAAGAACCAAGTCGCCATGAACCCTATCAACACTGTCTTTGATGCTAAGAGATTGATTGGTCGTAGATTCACTGATGCCTCTGTCCAGAGTGATATTAAATTGTGGCCTTTCAAGGTCATTGCTGGACCCGGTGATAAGCCAATGATTCAGGTCAGCTACAAGGGTGAAGAGAAGCAGTTTGCTGCAGAAGAAATCTCTTCTATGGTACTTATGAAGATGCGTGAGATTGCTGAAGCTTATCTTGGCTCTACAGTCAAGAATGCTGTTGTTACTGTCCCTGCTTACTTTAATGATTCTCAACGTCAAGCTACCAAGGATGCTGGTGTCATTGCTGGTCTTAATGTCATGAGAATTATTAATGAGCCTACTGCCGCAGCCATTGCTTATGGTCTTGACAAGAAAGCCACCAGTGTTGGTGAGAAGAATGTCTTGATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCTTTGCTTACCATTGAAGAGGGTATCTTTGAGGTGAAAGCCACAGCTGGGGACACCCATCTCGGAGGTGAGGATTTTGATAACAGGATGGTGAATCATTTTGTTCAAGAGTTTAAGAGAAAGAACAAAAAGGATATCAGTGGCAACCCTAGAGCTCTTAGGAGGTTGAGGACTGCTTGTGAGAGGGCTAAGAGAACTCTATCTTCTACTGCTCAAACCACCATTGAAATTGATTCTCTGTATGAGGGAATTGATTTCTACTCCCCCATTACCCGTGCCAGATTTGAGGAGCTCAACATGGATCTCTTCCGCAAGTGCATGGAACCAGTTGAGAAGTGTTTGAGAGATGCTAAAATGGACAAGAGATCTGTCCATGATGTTGTGCTTGTTGGTGGTTCCACTAGAATTCCCAAGGTTCAACAACTTCTACAGGATTTCTTTAATGGGAAAGAGCTCTGCAAGAGCATTAACCCTGATGAGGCGGTGGCATATGGTGCTGCTGTTCAAGCTGCTATCTTGAGTGGTGAGGGCAATGAGAAGATGGTTCAAGAGGCCGAGAAGTACAAATCTGAAGATGAAGAGCATAAGAAGAAGGTAGAGGCAAAGAATGCATTGGAGAACTATGCATACAACATGAGGAATACCGTGAAGGATGAGAAGATTGGAGGGAAACTTGATCCGGCTGACAAAAAGAAGATTGAGGATGCTATCGAGCAGGCCATCCAGTGGCTAGACAGCAATCAACTTGGTGAGGCAGATGAATTTGAAGACAAAATGAAGGAATTGGAAAGCATCTGCAACCCTATTATTGCCAAGATGTACCAGGGTGGTGCTGGCCCAGACGTTGGAGGTGCTATGGATGACGACGTTCCTACTGGTGGAAGCGGTGCTGGCCCAAAGATTGAGGAAGTAGACTAA 1557 0.4566 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFTDASVQSDIKLWPFKVIAGPGDKPMIQVSYKGEEKQFAAEEISSMVLMKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKRSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGGKLDPADKKKIEDAIEQAIQWLDSNQLGEADEFEDKMKELESICNPIIAKMYQGGAGPDVGGAMDDDVPTGGSGAGPKIEEVD* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0401 518 PANTHER HEAT SHOCK PROTEIN 70KDA 392 498 IPR013126 GO:0005524|GO:0140662
Apr8g0401 518 PANTHER HEAT SHOCK PROTEIN 70KDA 1 394 IPR013126 GO:0005524|GO:0140662
Apr8g0401 518 Coils Coil 391 411 - -
Apr8g0401 518 PRINTS 70kDa heat shock protein signature 8 21 - -
Apr8g0401 518 PRINTS 70kDa heat shock protein signature 36 48 - -
Apr8g0401 518 PRINTS 70kDa heat shock protein signature 58 66 - -
Apr8g0401 518 PRINTS 70kDa heat shock protein signature 146 166 - -
Apr8g0401 518 PRINTS 70kDa heat shock protein signature 209 219 - -
Apr8g0401 518 PRINTS 70kDa heat shock protein signature 337 353 - -
Apr8g0401 518 PRINTS 70kDa heat shock protein signature 369 389 - -
Apr8g0401 518 Gene3D - 192 366 - -
Apr8g0401 518 Gene3D - 409 518 IPR029048 -
Apr8g0401 518 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Apr8g0401 518 Gene3D Actin; Chain A, domain 4 235 318 - -
Apr8g0401 518 Gene3D - 71 126 - -
Apr8g0401 518 Gene3D - 10 384 - -
Apr8g0401 518 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Apr8g0401 518 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Apr8g0401 518 MobiDBLite consensus disorder prediction 489 518 - -
Apr8g0401 518 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Apr8g0401 518 Pfam Hsp70 protein 392 488 IPR013126 GO:0005524|GO:0140662
Apr8g0401 518 Pfam Hsp70 protein 9 389 IPR013126 GO:0005524|GO:0140662
Apr8g0401 518 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 392 498 - -
Apr8g0401 518 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 394 - -
Apr8g0401 518 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Apr8g0401 518 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Apr8g0401 518 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 413 494 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0401 Apr-Chr8 3408330 3411506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0401 1 518 Calmodulin-binding Proteins AT5G02500 90.979 0.0 973
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0401 K03283 - csin:114277576 881.708