Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0393 ATGAATCACTGTGTTCCAGATTTCGAAATCGAAATGGATGACGATGAAGATTACTCAACTCCAGTCTCGAAGAAACCCTCCACGCAAAACAACGAGATCATGGAACTGTTATGGCACAACGGCCAGGTCGTGATGCAAAGCCAAAACCAAAGACCGTTCAGAAAACCGCCACCGCCGGACACCAAAGCCGGCGACGGCGCCATTCCGGCGAAGGAGATTCGATCTTCCGAAGCACAAAATTACAGTAACCAACACCTCTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCAATGAAGATCCTTCTCCCTTCGATCATCACGATTTCTGCGCCGACATACTCTACCCGCCGCAAAACGTTGCCGGGAGCCAGAATCACAACAGCGCCGCCATTCGAACGGAGGAGCTCCGACATCCGCCACCACCGGTGGCTCCTCGACCTCCGATTCTGCCGGCGAGACGGCCGGAGCAGGCGGCGAACAGGATACAGAACTTCGCGTACTTCTCGAAGCACAGCAATGCTAGGGCGGAGCCGCGACCGTCGTCGAGTTCGAAAGCCGCGGCGGCGCAACCGAAGGTGGTGGAATCGAGCGACACGACGGTCGCGACGGCGGGGCACGCGGAAACCGGTTGCGCCGCTGCGGGGAAAGCGGCGGCGGCGTCTAGCGGCGGAAGGGAGACGGGGACGTGCGATTTGACGTTGACGTCATCGCCGGGCGGTTCGAGCGGAAGTGCTGAACCGGTTCAGAGGGAAACGGTGGTGGACCGGAAGAGGAAGGGAAGGGAACAGGAGGAATCGGAGTTTCAGAGCGAGGATGTTGATTTTGAATCTCCGGAAACCAAAAGACAAGCTCGTGGTTCTACATCTACAAAGAGATCTCGTGCTGCAGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGAGATAGAATTAATGAAAAGATGAGAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGATGCAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCGGGAATCCAGCAGTACATGCCACCAATGGGAATGGGGATTGGCATGGGTATGGGCATGGATATGGGAATGAACAGACCAGTAATGCCATTTCCCAATATGTTAGCAAGTTCAACTTTGCCAGCAGCAACTGCAGCTACTCATTTGGGACCAAGGTTCCCTATGCCTCCTTTCCATATGCCCCATGTACCAATCACGTCTGATCCATCCAGAATGCAAGCAGCAAATCAGTCAGAAAATAATAATATGCAGCTTAACTCACTTGGTACACTGGATCCGGATCAATCACGTATCCCAAACTTCACTGATCCTTATCAGCAATACCTCGGTCTTCAACAGGTGCAGTTACAATTGATGCAGGCAATGAACCAACCAAATGTTAGCAAGCCAAGTACCAGCAGGGGCCAAGAGAATCCAGAGAAGCATCAATCAGAAGAAACATGA 1539 0.5198 MNHCVPDFEIEMDDDEDYSTPVSKKPSTQNNEIMELLWHNGQVVMQSQNQRPFRKPPPPDTKAGDGAIPAKEIRSSEAQNYSNQHLFMQEDEMASWLHYPINEDPSPFDHHDFCADILYPPQNVAGSQNHNSAAIRTEELRHPPPPVAPRPPILPARRPEQAANRIQNFAYFSKHSNARAEPRPSSSSKAAAAQPKVVESSDTTVATAGHAETGCAAAGKAAAASSGGRETGTCDLTLTSSPGGSSGSAEPVQRETVVDRKRKGREQEESEFQSEDVDFESPETKRQARGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQMQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMGMDMGMNRPVMPFPNMLASSTLPAATAATHLGPRFPMPPFHMPHVPITSDPSRMQAANQSENNNMQLNSLGTLDPDQSRIPNFTDPYQQYLGLQQVQLQLMQAMNQPNVSKPSTSRGQENPEKHQSEET* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0393 512 MobiDBLite consensus disorder prediction 175 205 - -
Apr8g0393 512 MobiDBLite consensus disorder prediction 47 67 - -
Apr8g0393 512 MobiDBLite consensus disorder prediction 254 270 - -
Apr8g0393 512 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 510 - -
Apr8g0393 512 MobiDBLite consensus disorder prediction 224 310 - -
Apr8g0393 512 MobiDBLite consensus disorder prediction 485 499 - -
Apr8g0393 512 Pfam Helix-loop-helix DNA-binding domain 302 348 IPR011598 GO:0046983
Apr8g0393 512 Gene3D - 293 356 IPR036638 GO:0046983
Apr8g0393 512 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 510 IPR031066 -
Apr8g0393 512 CDD bHLH_AtPIF_like 298 361 - -
Apr8g0393 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 296 364 IPR036638 GO:0046983
Apr8g0393 512 MobiDBLite consensus disorder prediction 1 27 - -
Apr8g0393 512 MobiDBLite consensus disorder prediction 485 512 - -
Apr8g0393 512 SMART finulus 304 353 IPR011598 GO:0046983
Apr8g0393 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 298 347 IPR011598 GO:0046983
Apr8g0393 512 MobiDBLite consensus disorder prediction 230 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0393 Apr-Chr8 3354134 3360146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0393 1 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 39.433 1.27e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g0393 HLH 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0393 - - gmx:100788491 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0393 8 3354134 3360146 Apr8g0393 8 3354134 3360146 ECH