Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0366 ATGGAGGAACCGCACAAACCAGACCAGACAGGTGGGGCCACATTGCCTTTCCGACACCGTCTCTCTCTCTCTCTCTCTCAATTCCATCACCACTCCCACCTAACCGTTTATTGTACTCAAACCTCAATTCCCTTCTTATTCTTCCACCCCTTACCTTATTCTTCCACAATTCTGAGTGATTGTGCTAATAGTGGGTCGATGTCAACGCTGTCCAAAGATGATAACTTGGTGCTGTCTTCTGAAGACTCTTCGTGCCCAGAAGAGTCTGAGCTTGAATTGGGTCTTGGGTTGAGCCTTTCTCGCTCTTCTTCAAAGTCTCACAACCATGTCCATGGTCCTTATGCTAGAATCTACACGGCTAAGGATTTTTCTTCTTCAACAGCATCACCTTCTTCTTCTTCCTCTTCCTCTCCTTCCTCTTTGAGCCGCCCCAACATAACTGCTGGCACCAAGAGAGCTGCTGATTCTCTTGTTGCTAATAACCGTCCCAGCCAAGTAGTTGGATGGCCTCCGCTTCGAACATATAGAGTGAATAGCTTTAATAGCCATGCAAAATCAACTGAAGTATTCAACTCTATGCCTGGAGAGAGTAAGAGCAATAATACTGTGGTAAGGAAGACTGCTGACAATGGCATTGATAATAACAACATTAATATCAAAGAAAAGGGACACCTCAGGAGTTCCCCATTTGTCAAGGTAAATATGGATGGGATACCGATTGGAAGGAAGGTTGATTTGAGCGCTCATAGTTCCTATGAAACCTTAGCCCAAGCATTGGAGGACTTGTTTAATGAATCAACCACAGTCATCACTTGCAAAGGATCGCATGGGGAGGATCATGGCATTATTATTGGAGGAGAAAGGCATTCAAAATTGTTGGATGGATCTACCAAGTTTGTGCTCACTTATGAAGATAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGTGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATAATGAGGACATCTGAGGCTAATGGACTTGCACCAGGATTGGAAGAAAAGAACATTAGACAGAAAGGCCAGCCCATATAG 1068 0.4457 MEEPHKPDQTGGATLPFRHRLSLSLSQFHHHSHLTVYCTQTSIPFLFFHPLPYSSTILSDCANSGSMSTLSKDDNLVLSSEDSSCPEESELELGLGLSLSRSSSKSHNHVHGPYARIYTAKDFSSSTASPSSSSSSSPSSLSRPNITAGTKRAADSLVANNRPSQVVGWPPLRTYRVNSFNSHAKSTEVFNSMPGESKSNNTVVRKTADNGIDNNNINIKEKGHLRSSPFVKVNMDGIPIGRKVDLSAHSSYETLAQALEDLFNESTTVITCKGSHGEDHGIIIGGERHSKLLDGSTKFVLTYEDKEGDWMLVGDVPWVMFLSSVRRLRIMRTSEANGLAPGLEEKNIRQKGQPI* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0366 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 69 345 - -
Apr8g0366 355 Gene3D - 224 345 - -
Apr8g0366 355 ProSiteProfiles PB1 domain profile. 228 335 IPR000270 GO:0005515
Apr8g0366 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 345 IPR003311 GO:0005634|GO:0006355
Apr8g0366 355 MobiDBLite consensus disorder prediction 127 165 - -
Apr8g0366 355 MobiDBLite consensus disorder prediction 127 149 - -
Apr8g0366 355 Pfam AUX/IAA family 102 341 IPR033389 -
Apr8g0366 355 SUPERFAMILY CAD & PB1 domains 226 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0366 Apr-Chr8 3084381 3089664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0366 232 342 B3 DNA Binding Superfamily AT4G23980 34.234 7.76e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr8g0366 AUX_IAA 2e-60 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0366 K14484 - gmx:100779400 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0366 8 3084381 3089664 Apr8g0366 8 3084381 3089664 ECH
Apr4g0070 4 600144 603261 Apr8g0366 8 3084381 3089664 PCT