Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0363 ATGGCACCCAATAAAAGAGTGGCTGGGGCTTATCGTGCAATGGCAAGTCTTGGGATTGCTGAAACAAAAGTGAAATCAGTATTAAAGAAACTCCTCAAATTGTATGACAAAAATTGGGATCTTATTGAGGAAGAGAACTATAGAGTCCTAGCAGATGCTATATTTGAGGATGAAGAAAATGAGGAAGAAGAGACGGAGGGTGAAGAGACTCAAATGCATATTGAAGAAGCCCGACCTTTGAAAAGGTTGCGTTTAAGAGGCCAAGAGAGTCAGCCTTTGAATTCTCTGAATAACAGTACCTCCAGCTCTTCTGCTTCTCCATCAAAAAAGCCTAGATTAGAAGACAATGCATTCTCCAAGGGTCATTCTGGACAGAAGCCTCAAAACAGAGAAGTGTCATCTGATGGGAATGTGAGGATTGAAGCACACCCACTCCCACCACAAGATGGTATTGTTGACAAGGGAAAGCAACCTGCATCACCCCAAGTTGCTCACGGAGGAAGAAGACTTGCATCTGAAAGAGTGACCCCATCCTTACCATCTAAACAACAAACAGTTGAACAAGGAAAGCTTCTGTTGTCAAACAATCAAATGCCTTGTACTCACACACTTATCATACCCAAGGATGAGCCTATTGATGAATTGCCTGATTATGAGGTTCCAATTGCAGTGATTCCTCCTGAACCATCAAGTGTAAGGCGCTTATCAATGAAGAATGGTGTAGCTGGAAAGCATGGTAGCCATGCTAGTGTGACATCATCACAATGCCAAGATGGAAATAGAGATGAAGATATTCTTCCTTCATCAAATGAAGAAGCGACTTGTACTGTAGAGATAGCTTCATCAACTCTTGGAGAGGTAAAACTTTCTTTGAGCTGCAGCTCAGCTCTTCGGGGACCAGATTTTCGTATGCCTAGTCGAGATCAACTTCTAGAAATGATTGAGGATAAATGTCTGCATTCATATAAAATCACTGACCCAAATTTTTCTGTCCTGAAACTGTTGAGAGATATATGTGATTGCATGTTGGAATCTAGAACTGATTCAAATGATGGGTTGCAAGAAGGCTCTATGATAAGAACCAGTGTTGACGTGTTGAAGGAATCAGAGGCACATGGCAAACAGAGTGTAGGAGGAAATAAGGATTTGGAGATGTTTTCTCACTCTTCCAATGGATCAGTTGATGTCAAGTCTTCTGCTGCCTTAGTTTCTCCCCAAGGTACCTTTTCTATACCCCCCCTGAGTGGCTTGGATGATGCTGTAATGGTTTCCAAGATGGGCAGCACAAATGATTTTTCACAAAGTATTGTCAGAAAGGATCTGGAAGCTCCTACATCTCCAAATTCTCATAGTTTAGTTGTTGTTTCACAGCATCAGCTTACAGCTGATGATATAAGGTCTTTTCATGATGTTAATGACCTTACAAAAGGAGAAGAAATTGTTCAAATTGCATGGGTGAATGAAAATACCACTGACTTTCCACCAGCTTTTAACTACATTCCCCAAAACCTTGTGTTCCAAGATGCTTATGTGAACATTTCTCTATCCCGTATTGGGGGCAAGGATTGTTGTTCAACTTGTATGGGCAATTGTCTCTTGCCATCTACATCCTGTGTTTGTGCAAATAAAACTGGAGGTGAATTTGCATACACTGCTCAAGGCTTACTGAAGGAAGAGTTTGTGGAAGAGTGCATTGCCATTAGTTGCAACCCTCAACAACATTTCTTCTATTGCAAAGATTGCCCACTTGAAAGATCTAAGAATGGTGGTTGTTTAGAACCATGTAGAGGACATTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGCGGGAAACAGTGTGGCAATCGAGTTATACAGCGAGGAATAACTTGCAACTTGCAGGTATTTTTCACTTCAGAGGGAAAAGGATGGGGTCTTCGTACCTTAGAGGACTTGCCAAAGGGTGCATTTGTGTGTGAATTTGTTGGAGAAATTTTAACCATTAAAGAGTTGCATGAGAGGAATATGAAATGCACTAAAAATGGGAAATATACATACCCAATCCTACTGGATGCGAATTGGGATTCAGGATTTGTGAAGGACGAAGAAGCTCTATGCTTGGATGCAGCCTCCTTTGGCAACACTGCTAGATTTATCAATCACAGATGTTCTGATGCAAACTTGGTGGAGATCCCAGTCGAAGTTGAGGATCCCGATCATTACTACTATCATTTTGCCCTTTTTGCTTCCAGAAAAATAGCAGCACAGGAAGAACTAACATGGGATTATGGCATTGACTTTGATGACCCTGATCATCCTGTCAAACTGTTCCAGTGCAGATGTGGCAGTAGATTCTGCAGGAATATGAAGCGATCAAATAGATCCATTAGATCTGCTTCATTTGGACGATGA 2403 0.4128 MAPNKRVAGAYRAMASLGIAETKVKSVLKKLLKLYDKNWDLIEEENYRVLADAIFEDEENEEEETEGEETQMHIEEARPLKRLRLRGQESQPLNSLNNSTSSSSASPSKKPRLEDNAFSKGHSGQKPQNREVSSDGNVRIEAHPLPPQDGIVDKGKQPASPQVAHGGRRLASERVTPSLPSKQQTVEQGKLLLSNNQMPCTHTLIIPKDEPIDELPDYEVPIAVIPPEPSSVRRLSMKNGVAGKHGSHASVTSSQCQDGNRDEDILPSSNEEATCTVEIASSTLGEVKLSLSCSSALRGPDFRMPSRDQLLEMIEDKCLHSYKITDPNFSVLKLLRDICDCMLESRTDSNDGLQEGSMIRTSVDVLKESEAHGKQSVGGNKDLEMFSHSSNGSVDVKSSAALVSPQGTFSIPPLSGLDDAVMVSKMGSTNDFSQSIVRKDLEAPTSPNSHSLVVVSQHQLTADDIRSFHDVNDLTKGEEIVQIAWVNENTTDFPPAFNYIPQNLVFQDAYVNISLSRIGGKDCCSTCMGNCLLPSTSCVCANKTGGEFAYTAQGLLKEEFVEECIAISCNPQQHFFYCKDCPLERSKNGGCLEPCRGHLKRKFIKECWSKCGCGKQCGNRVIQRGITCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTIKELHERNMKCTKNGKYTYPILLDANWDSGFVKDEEALCLDAASFGNTARFINHRCSDANLVEIPVEVEDPDHYYYHFALFASRKIAAQEELTWDYGIDFDDPDHPVKLFQCRCGSRFCRNMKRSNRSIRSASFGR* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0363 800 MobiDBLite consensus disorder prediction 121 135 - -
Apr8g0363 800 Pfam Ubiquitin-binding WIYLD domain 5 60 IPR018848 GO:0018024
Apr8g0363 800 MobiDBLite consensus disorder prediction 246 270 - -
Apr8g0363 800 Gene3D - 1 60 IPR043017 -
Apr8g0363 800 ProSiteProfiles SET domain profile. 628 761 IPR001214 GO:0005515
Apr8g0363 800 Pfam Pre-SET motif 475 620 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr8g0363 800 MobiDBLite consensus disorder prediction 240 270 - -
Apr8g0363 800 MobiDBLite consensus disorder prediction 57 185 - -
Apr8g0363 800 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 354 797 - -
Apr8g0363 800 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 287 - -
Apr8g0363 800 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 800 IPR025776 -
Apr8g0363 800 Gene3D SET domain 461 787 IPR046341 -
Apr8g0363 800 SMART set_7 628 767 IPR001214 GO:0005515
Apr8g0363 800 ProSiteProfiles Pre-SET domain profile. 519 625 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr8g0363 800 CDD SET_SETDB-like 495 761 - -
Apr8g0363 800 MobiDBLite consensus disorder prediction 71 85 - -
Apr8g0363 800 MobiDBLite consensus disorder prediction 88 110 - -
Apr8g0363 800 SUPERFAMILY SET domain 484 784 IPR046341 -
Apr8g0363 800 Pfam SET domain 640 761 IPR001214 GO:0005515
Apr8g0363 800 SMART preset_2 471 612 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr8g0363 800 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 287 - -
Apr8g0363 800 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 354 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0363 Apr-Chr8 3063216 3069559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0363 604 786 C2H2 Transcription Factor Family AT2G23740 42.328 7.62e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr8g0363 Pre-SET 7.5e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0363 8 3063216 3069559 Apr8g0363 8 3063216 3069559 ECH
Apr4g0843 4 6791877 6802872 Apr8g0363 8 3063216 3069559 PCT
Apr8g0363 8 3063216 3069559 Apr4g0064 4 554901 563123 PCT