Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0360 ATGGAAGCACATCCTACTTTCTCCTTTGAAAGATCAAAACAACTCAATAACATAGGGGTGTCTGGAGCACTTTCTTCATCCTTGTCAGTCCTTCCAATACCCCCAGAAGGGATGTATCCCAAGCCTGATTCACAGCTGGATTCTGTAGAACATGAGCTTATGACAAGACCTTTTACTCATTCAAGTTATTTAAATTCCGGTGGAGTTGTTGGGCATATTTTTTCATCTTCCCCTGGATATTCAACCGATCTTCATCACTCATCCCTTTCCCCTCATGAAAAACACTCTACTAATGCTCACTTTGTTTCACAATCAATGAATAACGTGGGCCAATTTCCATTATCATATTCTTCAAATAACGAACCACCAACTTCTGCAACATGTAGCCATTATTCCCAAGAAAATAATGCTTCCTGGCATACAGATTCCCTGACAAGCTTTCTGGATTTTCCTGCAAATAACTCTATTGATAATGGTCGGGTAGAAAACAGTGCCTGCACTATCATGGCATCTGAGGAGTACCGTAAGCAAAATGATTGGAAGGACTTGGCTGAGCAGCTACTTAGTGATGATGATACTTTGACTTCTAATTGGAATGACCTACTTGCTGACAACATTCAAGATCTTGAGCCAAAGGTTTCAAAACCATTTTCAGAGTTTCCAGAACATCAATCCCAAGGCCATCAGGAACTTCCTGCTTCATATGGAGAAAATTGCATTAGTGTTGCCCCCTCTTCCTCAGCAAATTCTGCTCCGGCCAAGTCACGAATGCGTTGGACACCAGAACTTCATGAGACCTTTGTCGAGGCTGTCAACCAACTTGGCGGGAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCATTTGCAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGTTATGGATAAAAAATCAAGTTCCATTGAAGAGACGTCATCTCTAGATTTGAAAACTGGTATTGAGATTACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTCCAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAAATGATGTTTGAAAAGCAATGTAAACCTGGAACTGAAACGTTCAAGGCACTGTCATCTACCATTGAGAGTCCATCTGGAATGTCTTCAAATGCTACTAGAGATTTCCCTGCCAATAATGAAATGGAAGCATCACTAGCAGACCCATGCAAGTCAGGACCTGATCAAGTTATCAGCAGTGCTACAGTCAAGGAAGGATCACCAGAAAAGGGTGGGACGCCGGATTCTCCCCAAACTCAACATGCTATTGCTAATGAAGATAGTGCTCAAGCCCCAAAGCGTCAAAGAACGGAGAAAGCCATATGA 1431 0.4193 MEAHPTFSFERSKQLNNIGVSGALSSSLSVLPIPPEGMYPKPDSQLDSVEHELMTRPFTHSSYLNSGGVVGHIFSSSPGYSTDLHHSSLSPHEKHSTNAHFVSQSMNNVGQFPLSYSSNNEPPTSATCSHYSQENNASWHTDSLTSFLDFPANNSIDNGRVENSACTIMASEEYRKQNDWKDLAEQLLSDDDTLTSNWNDLLADNIQDLEPKVSKPFSEFPEHQSQGHQELPASYGENCISVAPSSSANSAPAKSRMRWTPELHETFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEVMDKKSSSIEETSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGTETFKALSSTIESPSGMSSNATRDFPANNEMEASLADPCKSGPDQVISSATVKEGSPEKGGTPDSPQTQHAIANEDSAQAPKRQRTEKAI* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0360 476 Pfam MYB-CC type transfactor, LHEQLE motif 338 384 IPR025756 -
Apr8g0360 476 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 26 474 IPR044848 GO:0003700
Apr8g0360 476 Coils Coil 341 361 - -
Apr8g0360 476 MobiDBLite consensus disorder prediction 419 476 - -
Apr8g0360 476 Pfam Myb-like DNA-binding domain 256 307 IPR001005 -
Apr8g0360 476 MobiDBLite consensus disorder prediction 447 461 - -
Apr8g0360 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 251 311 IPR017930 -
Apr8g0360 476 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 254 308 IPR006447 GO:0003677
Apr8g0360 476 Gene3D - 253 312 - -
Apr8g0360 476 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 26 474 - -
Apr8g0360 476 SUPERFAMILY Homeodomain-like 252 308 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0360 Apr-Chr8 3043705 3050937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0360 32 382 G2-like Transcription Factor Family AT4G28610 48.767 5.19e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr8g0360 Myb_DNA-binding 6.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0360 - - gmx:100793593 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0360 8 3043705 3050937 Apr8g0360 8 3043705 3050937 ECH
Apr8g0360 8 3043705 3050937 Apr4g0061 4 533597 541100 ECH
Apr4g0061 4 533597 541100 Apr8g0360 8 3043705 3050937 PCT
Apr4g0845 4 6808970 6813694 Apr8g0360 8 3043705 3050937 PCT