Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0355 ATGAAGTGCCTACGCTCAGGGGACCCATTGGGAGGAGCAGATGAAGTGTTTCCTTCATCCGAATCTCTTGTAAGTGCAACCAAGGACTTTTCAGCTAGTGGACATTCTTTCCTAGCTGAACATGTTGATACGAAGCTGGACACTGGCAATATAGAAGAAGCTGAATCATCCTTACGCGAGAGTGGCGTCTTGAACTATGAGGAAGCTAGAGCTCTACTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCTTTACATGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATTAAAATTGCCCTTACTAGAAGCAAAGAGCGCCGCAAGAGACATCCCCAAGATCATGCTGAACCACAAATGTCTATACATGCTGTTGGCTTACTGTTGGAAGCCATCTTCCTAAAAGCAAAATCTTTGCTGGTTCTTGAAAGGTTTAAAGAGGCTGCACAATCTTGCAAAGTTATTCTGGATATAGTGGAATCTTCATTGCCTGAAGGTTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGCAATTTTATCTTACCGGCGAGCACTTCTTCACCAATGGAATCTTGACGTAGAGACTATAGCAAAGATTCAAAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGAGAATCAACGCCCCCTAATCTCCGTTCCCAAATGGATGGCTCATTTGTACCTAGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTGTTAAGAAAAGTCTCTCTAAATAGAATTAAGTGGGATCCTTCAATTTTAGACCACCTTTCATTTGCACTGTCTGTTTCGGGGGATTTAACAGCTTTAGCCAATCAATTAGAAGAATTGCTTCCTCGGACTATCCGTCGAAGTGAAAGGTACTATGCTCTAGGTATTTGTTATTATGGAGCGGGTAAGGACAAGGTAGCATTAGATCTTTTCAGAAAATTGTTGAGCAGTAGAGAGGACAAAAACCATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTCAAAGCTCGAGTCTTGCAGAAGAAGGAACAGGGTTTGCACAGCGAGTGCTTGAGGGCTTGGATGGCAGATGTAATCAGCTAGAAAATCTTGCTACTTTCTTTCATGGTGTTTCACTTTCAGCACACTCGAAATTGGCCATTTCTGATTCTGAGAGGTTTAAGAGACAATCTGAAGCACTACATGCCCTAGAAACTGCCGGCAGAATGACCAGAATGAGAGACCCCATGATACTATACCATCTCAGTTTAGAATATGCAGATCAAAGGAAGTTGGATGCTGCACTTTATCATGCAAAGTTATTTGTAAAACTGGAAGGTGGTTCTAATGTTAAAGGGTGGTTATTGTTAGCACGGATATTATCTGCTCAAAAACGGTTTTTGGATGCTGAGTCTATTATCAATGCTGCTTTGGATCAGACTGGAAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAGTGCCGTTGAGACATATACTCAGCTTCTTGCTGTTCTTCAAATTCAGAGTAAAGGCTTTGGTTCTGGGAAGAAGCTATATAAGGTTTATTGTTATTGTGCTCGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTTATGTATATATCAGTCTCTTACAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCCAAGGCCATCAAACCATACTCAGCTTCTAGATGTCATGCAATAGGTATAATGTACGAAGCAAAGGGTCTTTACAAAGAGGCACTAAAAGCTTTTAGTGATGCTTTGGACATTGATCCTGGCCATGTCCTTAGCTTAATCTCCACTGCTGTAGTTCTTAAACGATGCAGTAATCAATCGAATCCTGCAGTGAGAAGCTTTCTGATGGGTGCATTACGACATGACAGATTCTGTGCTTCTGCTTGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGGTACAACATCATCATTAGTAGAAGCTACAGAATGTTTTCAGGCAGCACACATTCTTGAAGAATCTGAACCTGTTGAACCTTTCAGATGA 2145 0.4103 MKCLRSGDPLGGADEVFPSSESLVSATKDFSASGHSFLAEHVDTKLDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALTRSKERRKRHPQDHAEPQMSIHAVGLLLEAIFLKAKSLLVLERFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREAILSYRRALLHQWNLDVETIAKIQKEFVVFLLYSGGESTPPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIKWDPSILDHLSFALSVSGDLTALANQLEELLPRTIRRSERYYALGICYYGAGKDKVALDLFRKLLSSREDKNHVPGLLMASKICCQSSSLAEEGTGFAQRVLEGLDGRCNQLENLATFFHGVSLSAHSKLAISDSERFKRQSEALHALETAGRMTRMRDPMILYHLSLEYADQRKLDAALYHAKLFVKLEGGSNVKGWLLLARILSAQKRFLDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGQLRSAVETYTQLLAVLQIQSKGFGSGKKLYKVYCYCARNLEVEIWHDLAYVYISLLQWHDAEVCLSKSKAIKPYSASRCHAIGIMYEAKGLYKEALKAFSDALDIDPGHVLSLISTAVVLKRCSNQSNPAVRSFLMGALRHDRFCASAWYNLGLLHKAEGTTSSLVEATECFQAAHILEESEPVEPFR* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0355 714 ProSiteProfiles TPR repeat profile. 602 635 IPR019734 GO:0005515
Apr8g0355 714 PANTHER PROTEIN NPGR2 1 714 - -
Apr8g0355 714 Gene3D Tetratricopeptide repeat domain 557 710 IPR011990 GO:0005515
Apr8g0355 714 SUPERFAMILY TPR-like 513 686 IPR011990 GO:0005515
Apr8g0355 714 SUPERFAMILY TPR-like 319 540 IPR011990 GO:0005515
Apr8g0355 714 SMART tpr_5 512 545 IPR019734 GO:0005515
Apr8g0355 714 SMART tpr_5 134 167 IPR019734 GO:0005515
Apr8g0355 714 SMART tpr_5 672 708 IPR019734 GO:0005515
Apr8g0355 714 SMART tpr_5 602 635 IPR019734 GO:0005515
Apr8g0355 714 SMART tpr_5 319 352 IPR019734 GO:0005515
Apr8g0355 714 SMART tpr_5 476 509 IPR019734 GO:0005515
Apr8g0355 714 SMART tpr_5 568 601 IPR019734 GO:0005515
Apr8g0355 714 Gene3D Tetratricopeptide repeat domain 26 380 IPR011990 GO:0005515
Apr8g0355 714 Gene3D Tetratricopeptide repeat domain 407 556 IPR011990 GO:0005515
Apr8g0355 714 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Apr8g0355 714 ProSiteProfiles TPR repeat profile. 319 352 IPR019734 GO:0005515
Apr8g0355 714 SUPERFAMILY TPR-like 135 351 IPR011990 GO:0005515
Apr8g0355 714 Pfam Tetratricopeptide repeat 603 634 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0355 Apr-Chr8 3004011 3010637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0355 1 714 Calmodulin-binding Proteins AT4G28600 58.540 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0355 K21843 - gmx:100800762 1207.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0355 8 3004011 3010637 Apr8g0355 8 3004011 3010637 ECH
Apr4g0050 4 459130 464872 Apr8g0355 8 3004011 3010637 PCT