Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0349 ATGGAGCATGTGATTGGTGGGAAGTTTAAACTGGGAAGAAAAATTGGGAGTGGGTCTTTTGGGGAGCTCTATTTAGGTGTTAATGTACAAACTGGAGAGGAGGTGGCTGTAAAGTTGGAACCTGTAAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAATTGTACATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAATGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTAGAAGATTTATTCAATTATTGCAACCGGAAGTTCTCATTGAAGACAGTGTTAATGCTTGCTGATCAATTGCTTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTCTAATGGGCCTAGGACGAAAAGCAAATCAAGTGTACGCCATTGACTATGGCCTTGCTAAAAAATATAGGGATCTTCAGACTCATAGGCATATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGCATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTGAGAGGAAGTCTTCCTTGGCAGGGTCTGAAGGCTGGCACCAAAAAACAAAAGTATGATAAAATCAGTGAGACGAAGGTGTCAACTCCCATAGAGGTGCTGTGCAAGTCATACCCCTCTGAGTTTGTATCATACTTCCATTATTGCCGATCATTGCGGTTTGAGGACAAGCCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTGTTTATTCGAGAAGGCTATCAGTTTGACTATGTTTTCGACTGGACAATGTTGAAGTATCCACAGATTGGTGGCAGCTCTAGAGGGAGGGTTAGTACTGGCAAGGCAGCTATGAATGCAGGTCCACCTGTACAAAAACCAGAAAAGATCTCAGTTGGGAAAGAGATTCGAGAGAAACTCTCTGGTGCGGTTGAAGCATTCTCCCGGAGGAACCCTGCAAGTCCTGGTCCTCGTGGTGATCACACCAAACATAGGACTTATGAGGATGTACCTGTACAGAAGGATTTGGTAATATTATTCAACAATAGAGAAAATAGGAATCACAGTCGATATGGCAGCAGTTCAAGAAGAGCCATGATCTCATCAAACAAGCAAATTTCCTCAAGTGATTACACTGGCAGGCTAGCCTCAAGTGGTAGCCGTCCATCTGGTGCTCATAGAATTCAACCTGTGTATGACTCCAAACCAGCAACTTATACACGCAGTGGCTCTACAAGAGGCCACCGTGATGATCCTCTGCACAGCTTTGAGCTTCTCTCTATTAGGAAGTAA 1377 0.4343 MEHVIGGKFKLGRKIGSGSFGELYLGVNVQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTMLKYPQIGGSSRGRVSTGKAAMNAGPPVQKPEKISVGKEIREKLSGAVEAFSRRNPASPGPRGDHTKHRTYEDVPVQKDLVILFNNRENRNHSRYGSSSRRAMISSNKQISSSDYTGRLASSGSRPSGAHRIQPVYDSKPATYTRSGSTRGHRDDPLHSFELLSIRK* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0349 458 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 447 - -
Apr8g0349 458 PANTHER CASEIN KINASE-RELATED 1 447 - -
Apr8g0349 458 MobiDBLite consensus disorder prediction 381 419 - -
Apr8g0349 458 Gene3D Transferase(Phosphotransferase) domain 1 1 333 - -
Apr8g0349 458 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0349 458 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Apr8g0349 458 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Apr8g0349 458 MobiDBLite consensus disorder prediction 381 450 - -
Apr8g0349 458 MobiDBLite consensus disorder prediction 340 361 - -
Apr8g0349 458 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0349 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Apr8g0349 458 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g0349 458 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0349 Apr-Chr8 2955392 2963973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0349 8 213 MAP Kinase Kinase Kinase AT3G06030 25.926 9.25e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Apr8g0349 Pkinase 1.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0349 K08960 K08959 gmx:100789031 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0349 8 2955392 2963973 Apr8g0349 8 2955392 2963973 ECH
Apr4g0042 4 407957 414820 Apr8g0349 8 2955392 2963973 PCT