Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0345 ATGGAGGAAGAGGAGGATCGAATTTTGCTCTCTCGTTTGGGCGTAAAGTCTGCAAATCCTGAAGACATTGAACGCGACGTTTTAGAGAAGGCTAGGAATGATGCAGTGACCGTTACTGAAGCTGAAGATAGCGCCAAGGAAGAGTGTTGTCATTTACCTGAAAATGTCGATCCATCGTCTACTGCTAAAACTGAACTTCATCAAAAGTTGAGAGCAGTAGAATTTGAAATAAATGCGGTAGCCTCCACCGTTGAGCAGTTGAGAAATGTCGAAAATAATGGAGAATGCAGTGATGTTGTTGAGGACGGCTCGGAGCAAGGGGTTGCGGAGGGTGATTCCTCCAATGGTTCAAACCTTCAGCGTGTTCTTGCTGCTGATAGGTTGAGGAGCCTAAAGAAGACAAAGGCTCAACTAGAGAAAGAGCTTTTGAATTTGTCTAAGGATAATGCTTTCGAAAGTGTTGAGCAAGAGAAATTGATCTTTAGTTTAGTTAAGGAAGAAAGAAGATCTAAGAGGAAGTCCAAAGAAGATGAGAAATTGAGTAAGGGCTCAGGGAAGCGGATTAAGAAAGTATCATATGATGATGATATTAATTTTGATGCTGCTCTGGATGCAGCCTCGGCTGGCTTTGTTGAAACGGAAAGGGATGAACTGGTGAGAAAGGGAATTTTAACCCCTTTTCATAAGTTGAAGGGCGTTGAACGCCGCTTCCAACAAACTGAAACATCAACTAGTCATAATGCAGCTGAGGAAGATATTGCTGGTGATCTGGCTTCTTCCAGTGTTGAAAGAGCTGCCAAATCAATGTCTGAGGCAGCAAGATCTCGTCCAACCACCAAGCTGCTTGAGCCTGAAGCTGCACCGAAGCTTGATGCACCCACTTTTCCTTTTCTCAGGCTCAAGAAACCACTAAAATTTCCCAAACCTTTAGAGACAGAGGAGGAGCCAAATAAAGATTCTAAAAGGAAAAAGAGACGGCCGTTGCCCGATAGGAAATGGACCAAGCGTGTTTCTTGTGAGGATATACATCTGGAAAAAAGTGCAAATGTGAATGGTTGCTTGGACACTTCCAGTTGTGAAAACTCAGAAGCACAAGATGTTGAACTTGATGATCATTCTTATGTAACATTGGAAGGTGGGCTAAAAGTCCCTGATAAAATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGCGTTCAGTGGATGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGACGAGATGGGTCTTGGCAAAACTGTCCAGGTCTTGTCATTTCTTGGTTCATTGCATTTCAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCTGTTACTCTCTTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCCATGTTGAGCTTTTACATGATTCTGCTCAGGATTCTGCTCCAAGAAAGAAGCCAGCTAAATCCGATGAAACGGACAGTGAAAGCAATAGTTCAAGTGACAATGATTATGTGAAAAGTGTGCCATCTAGAAACACAAGAAAATGGGAATCCCTGATAAATCGTGTCATGAGATCAGAATCCGGATTACTTATCACCACTTATGAGCAGCTTAGAATTCTGGGGGACCAGTTGCTTGATATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAGAATAAGGAATCCAAATGCTGAAGTTACCCTAGTTTGCAAACAGCTACAAACTGTACACCGCATCATAATGACTGGTGCACCTATTCAAAACAAACTGACTGAACTGTGGTCATTGTTTGACTTTGTTTTTCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCTGAATTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCCTTACAAGTATCCACAGCATACAGGTGTGCGGTGGTGCTGCGCGATTTAATCATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAAACTGAACATGTTCTGTTTTGCAGCCTTGCATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGGATATATTAGATGGACACAGGAATTCTCTTTACGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTCGAAAGGGAACATGCCTTCCGGGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTTCTTAATGTATGGAAGGAACAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTAACAACTTCTGGTCTTATTTATCGGAGAATGGATGGTCTCACTCCTATAAAACAGAGGATGGCTTTAATAGATGAATTTAATGCCTCAAGTGAAATATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGGACGAATCTTACAGGCGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCTTCAACTGACATGCAGGCCAGAGAGCGTGCTTGGCGAATTGGTCAGAAACGAGATGTGACAGTGTATAGGTTGATCACACGTGGAACTATTGAGGAGAAAGTGTATCATCGCCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAACAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTTACACTTAATGTGGATGGAGAAACTGGTTCAACTGAAACTTCAAGTATTTTCAGTCAAATATCTGAAGAAGTAAATATTGTTGGGACACACAGAGAGAATAAGGATAAGCGTAAACACAGCCAGACTGTTGAACCGGATGCTGAAGATGTTGCAGTTGGTAATGATGACAAATCACAGAGAAGATATTCCAGGGGAAAGGAGAAAGATAATGTTGAACATAGTGACGGGGTTGATGAGGAAACCAATATATTGAAAAGCCTTATTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCATGATGGGGAGAAGTTGAGACTTGAGGAGCAAGCATCCCAGGTTGCACAAAGAGCAGCAGAAGCTTTACGTCAGTCACGGATGCTACGAAGCCATGATAGCATCTCTGTTCCAACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCAACTGTTCGGCGGAAGTTTGGTTCAACTGTGAATTCCCAGTTGGTAAATAATACCAAAGCATCTGATTTACCCAGCAATGGAACTAACAAATTTAATGGATTCCCTGCTGGTGCATCTTCTGGTAAAGCATTATCTTCTGCTGAACTCTTGGCTCAAATTCGAGGTAACCAAGAAAAAGCCATTGGTGCTGGGCTTGAACATCAGTTTGGTATGTTGTCAAGTTCCACTAATCAATCAAGATCTGTAGATGTTAGATCTTTTAGGGCTACTGAAAATTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGTACCTTTCTGCAACAGCAAGGTGGTAGTTCCAATTCAGCCAGTATAGTTCAGTATTTCAAGGACCGAATTCCCTCAAAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGCATAAAGGATCAAATGGATCTCATTGGGTTCTGAAGCCAGATTATCTAGTGTAG 3666 0.4182 MEEEEDRILLSRLGVKSANPEDIERDVLEKARNDAVTVTEAEDSAKEECCHLPENVDPSSTAKTELHQKLRAVEFEINAVASTVEQLRNVENNGECSDVVEDGSEQGVAEGDSSNGSNLQRVLAADRLRSLKKTKAQLEKELLNLSKDNAFESVEQEKLIFSLVKEERRSKRKSKEDEKLSKGSGKRIKKVSYDDDINFDAALDAASAGFVETERDELVRKGILTPFHKLKGVERRFQQTETSTSHNAAEEDIAGDLASSSVERAAKSMSEAARSRPTTKLLEPEAAPKLDAPTFPFLRLKKPLKFPKPLETEEEPNKDSKRKKRRPLPDRKWTKRVSCEDIHLEKSANVNGCLDTSSCENSEAQDVELDDHSYVTLEGGLKVPDKIFEALFDYQKVGVQWMWELHCQRAGGIIGDEMGLGKTVQVLSFLGSLHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSAPRKKPAKSDETDSESNSSSDNDYVKSVPSRNTRKWESLINRVMRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLASEQVSAYRAFLASTEVEDILDGHRNSLYGIDVMRKICNHPDLLEREHAFRDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGLIYRRMDGLTPIKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSSIFSQISEEVNIVGTHRENKDKRKHSQTVEPDAEDVAVGNDDKSQRRYSRGKEKDNVEHSDGVDEETNILKSLIDANGIHSAMNHDLIMNAHDGEKLRLEEQASQVAQRAAEALRQSRMLRSHDSISVPTWTGRSGTAGAPSTVRRKFGSTVNSQLVNNTKASDLPSNGTNKFNGFPAGASSGKALSSAELLAQIRGNQEKAIGAGLEHQFGMLSSSTNQSRSVDVRSFRATENSSGLQPEVLIRQICTFLQQQGGSSNSASIVQYFKDRIPSKDLALFKNLLKEIATLHKGSNGSHWVLKPDYLV* 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0345 1221 Pfam SNF2-related domain 394 716 IPR000330 GO:0005524|GO:0140658
Apr8g0345 1221 PANTHER SNF2/RAD54 FAMILY MEMBER 253 1116 - -
Apr8g0345 1221 CDD DEXHc_ERCC6 391 601 - -
Apr8g0345 1221 Coils Coil 1011 1031 - -
Apr8g0345 1221 Gene3D - 658 956 IPR027417 -
Apr8g0345 1221 MobiDBLite consensus disorder prediction 308 323 - -
Apr8g0345 1221 Gene3D - 358 651 IPR038718 -
Apr8g0345 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 652 IPR027417 -
Apr8g0345 1221 MobiDBLite consensus disorder prediction 34 62 - -
Apr8g0345 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 915 IPR027417 -
Apr8g0345 1221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 898 IPR001650 -
Apr8g0345 1221 MobiDBLite consensus disorder prediction 34 53 - -
Apr8g0345 1221 MobiDBLite consensus disorder prediction 235 287 - -
Apr8g0345 1221 MobiDBLite consensus disorder prediction 474 505 - -
Apr8g0345 1221 SMART helicmild6 765 848 IPR001650 -
Apr8g0345 1221 MobiDBLite consensus disorder prediction 308 330 - -
Apr8g0345 1221 Pfam Helicase conserved C-terminal domain 741 848 IPR001650 -
Apr8g0345 1221 Coils Coil 121 155 - -
Apr8g0345 1221 MobiDBLite consensus disorder prediction 929 979 - -
Apr8g0345 1221 Coils Coil 28 48 - -
Apr8g0345 1221 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 602 IPR014001 -
Apr8g0345 1221 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 253 1116 - -
Apr8g0345 1221 CDD SF2_C_SNF 734 859 - -
Apr8g0345 1221 MobiDBLite consensus disorder prediction 474 492 - -
Apr8g0345 1221 SMART ultradead3 387 610 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0345 Apr-Chr8 2922035 2928816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0345 365 901 RAD5 or RAD16-like Gene Family AT1G02670 23.701 1.19e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr8g0345 SNF2_N 6.5e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0345 K10841 - gmx:100820025 2018.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0345 8 2922035 2928816 Apr8g0345 8 2922035 2928816 ECH