Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0338 ATGCATATAGGTCAAATGGACAGAAGTTCTGTGAAATGTCTAATCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGCCAAACAATGAACCCTATGCCCCTCCAGAATATCTGTAATAATATGGTTGGGGTGTTAAAGCATTTGAAACCAGTGCTTGATGATGTTGTGGATTACAAAATCCCTTTAGATGAGAATCTATTTGAAAAGTGTGAGGAATTGGAAATGCGAGTTAATGAAGCTAGAGATTTCATTGAAAAATGGGGTCCTAAGATGAGCAAGATTCACAGCGTTCTACAAGGTGGGATGTTGTTGATAAAGTTACAGAGCACTTCACTAGATATTTGCCACATGATAGTTAGATCTTTTCAGTCACCTCCATCTGCATCAGTTTTGGCTAATCTTCAGCACTATATCCAGGAAATTCAGTGTCTCAAGAAGGAAATGGCAATGGTATGTATAGAAGAAGCACTGAGAAACCAAAGAAACAATATTGAACCTTGCAAGGAGCATCTCAAAGAAATTATTGGGTTACTTAAATTAACATCAAAACAGGAACTCGTAAAAGAAAGTATTGCTGTGGAGAAAGAAAGGTTGAATGCTGAAGGCAACAAAATGAATGTGGACTTGGAAGAAATTAAAGAAATTGTAAACCTTGTCCATAATTTACGTGGTTATGTGATGGAAACTGAGGGTCCTGTACTCAAGAGTGGTGTCTCAATTCCTCCAGAATTCTGCTGTCCTTTGTCAATGGAACTCATGTTGGATCCTGTTGTTGTGACTTCAGGTCAAACATATGAGAGGCGATTTATTGAAAAATGGCTTGATAATGGGCTCACTGTTTGTCCTAAAACTGGTCAGAGACTTGTGCATAGAAATCTCACTTCCAATTTGGCTGTCAAATCTATGATAGCAGCATGGTGTGAGGAAAATACTGTCAAACTTTCCAGTAACTCTGAGCACAATAAATCTTCCCACATCACGTCCGTCTCAAATCAATTATTGCCTCAAGATTTAACTCATGATTGTTCTGTTGTGTCTTTATCTAGTAGCAATTCCATTTCAAGATCGTCTCTTCAAACTGCAAAGGATGATAACTCTTTCAGATCATGTGGAGAATACAATGGATGCCAGAGTGGAGCAACTGAAAAGTGTGAGCAACAATCCCCATATATTCACAGCAGAAGCGAATCATCTTCAAGTTCAATTTCTAGTGCTGATTGTGCACTTGCAGTTTCGAAGGAGTTGTCTGGGATATCAAATAAGCATCAAAATGTGAAGGTGCTGTCTGAAGAAAAAACAAATGTGTGTCATGGTGATAAGCAATCAGAGATATCTCCTTGGTTATCTGGAAAGCAATTTCAAAACCCTGGATCACATGTGGGAGGGTTGGAGAATGGAAATACCAACAATAGTGATACTAATAATAGTCATTCAAGAGTTGATTCCAATCCTGTTGTCAACTCAGGATTGGATGAATTGACCACCTCATCTCGTGTCAATAAATTGATTGAAGACCTACACAGCAAATCAATTGAGGTGCAAACTACTGCTGCAGAAGAATTAAGGCTCCTTACAAAGCATAACATGGAAAACCGTATCTTAGTAGGGAAATGTGGGGCTGTCATGCCTTTGATTTCGCTGCTATATTCAGACATGAAGAAAACACAAGAACATGCTGTGACAGCTCTGCTGAATTTATCTATTAATGAAAACAACAAGGCCTTGATTATGGAAGCAGGAGCTATAGAACCACTTATCCATGTTTTGAAGACAGGAAATGATAGTGCCAAGGAAAATTCCGCAGCAACTCTATTCAGTCTCTCAGTAATTGAGAACAATAAGGAAAAAATTGGCCGTTCTGGAGCAGTTAAAGCTTTGGTGGATCTTCTTGCCTCAGGAACTTTCAGAGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTGTCAATATTTCATGAGAACAAAGCTCGTATTGTTCAAGCCGGAGCAGTGAAGTTTCTGGTTCGGTTAATGGACCCTGCTGATGGAATGGTTGACAAGGTTGTTGCTCTTCTGTCAAACCTGTCAACAATTCCAGAGGGGCGACTAGAAATTGCAAGGGAAGGGGGCATTCCCTTAATAGTTGAAGTTGTTGAGTCAGGTTCCCAGAGAGGAAAGGAAAATGCTTCCTCCATTCTCTTGCAATTATGCTTTCATAGTTCTAAGTTCTGTACCCTGGTTTTGCAAGAAGGAGCTGTACCTCCCCTTGTTGCATTATCTCAATCTGGCACACCAAGAGCAAAAGAAAAGGCACAACAGCTTCTGAGTCATTTTCGTAACCTGCGGGAAGGAGCTAGTGCAAAGGGAAAGTCATGA 2358 0.3978 MHIGQMDRSSVKCLINSISRFIHLVSCQTMNPMPLQNICNNMVGVLKHLKPVLDDVVDYKIPLDENLFEKCEELEMRVNEARDFIEKWGPKMSKIHSVLQGGMLLIKLQSTSLDICHMIVRSFQSPPSASVLANLQHYIQEIQCLKKEMAMVCIEEALRNQRNNIEPCKEHLKEIIGLLKLTSKQELVKESIAVEKERLNAEGNKMNVDLEEIKEIVNLVHNLRGYVMETEGPVLKSGVSIPPEFCCPLSMELMLDPVVVTSGQTYERRFIEKWLDNGLTVCPKTGQRLVHRNLTSNLAVKSMIAAWCEENTVKLSSNSEHNKSSHITSVSNQLLPQDLTHDCSVVSLSSSNSISRSSLQTAKDDNSFRSCGEYNGCQSGATEKCEQQSPYIHSRSESSSSSISSADCALAVSKELSGISNKHQNVKVLSEEKTNVCHGDKQSEISPWLSGKQFQNPGSHVGGLENGNTNNSDTNNSHSRVDSNPVVNSGLDELTTSSRVNKLIEDLHSKSIEVQTTAAEELRLLTKHNMENRILVGKCGAVMPLISLLYSDMKKTQEHAVTALLNLSINENNKALIMEAGAIEPLIHVLKTGNDSAKENSAATLFSLSVIENNKEKIGRSGAVKALVDLLASGTFRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLMDPADGMVDKVVALLSNLSTIPEGRLEIAREGGIPLIVEVVESGSQRGKENASSILLQLCFHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNLREGASAKGKS* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0338 785 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Apr8g0338 785 Pfam U-box domain 241 311 IPR003613 GO:0004842|GO:0016567
Apr8g0338 785 PANTHER U BOX DOMAIN-CONTAINING 11 779 - -
Apr8g0338 785 Gene3D - 472 635 IPR011989 -
Apr8g0338 785 SUPERFAMILY RING/U-box 239 314 - -
Apr8g0338 785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Apr8g0338 785 SMART arm_5 652 691 IPR000225 GO:0005515
Apr8g0338 785 SMART arm_5 529 569 IPR000225 GO:0005515
Apr8g0338 785 SMART arm_5 570 610 IPR000225 GO:0005515
Apr8g0338 785 SMART arm_5 611 651 IPR000225 GO:0005515
Apr8g0338 785 SMART arm_5 692 732 IPR000225 GO:0005515
Apr8g0338 785 Gene3D - 638 781 IPR011989 -
Apr8g0338 785 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Apr8g0338 785 MobiDBLite consensus disorder prediction 447 492 - -
Apr8g0338 785 Coils Coil 196 216 - -
Apr8g0338 785 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 581 623 IPR000225 GO:0005515
Apr8g0338 785 SUPERFAMILY ARM repeat 494 772 IPR016024 -
Apr8g0338 785 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 622 664 IPR000225 GO:0005515
Apr8g0338 785 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Apr8g0338 785 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 779 - -
Apr8g0338 785 Pfam Armadillo/beta-catenin-like repeat 614 650 IPR000225 GO:0005515
Apr8g0338 785 Pfam Armadillo/beta-catenin-like repeat 570 609 IPR000225 GO:0005515
Apr8g0338 785 Pfam Armadillo/beta-catenin-like repeat 531 568 IPR000225 GO:0005515
Apr8g0338 785 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 663 704 IPR000225 GO:0005515
Apr8g0338 785 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0338 Apr-Chr8 2836555 2841309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0338 6 785 U-box Gene Family AT3G54790 50.754 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0338 - - gmx:100800949 1170.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0338 8 2836555 2841309 Apr8g0338 8 2836555 2841309 ECH