Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0335 ATGCCGTCGCTACTCTCTCCGGGCAAAATCCACCGTCTGGAGATGGATAATTTCAAGTCCTACAAGGGCTTCCAAGTCATCGGTCCCTTCTTCGACTTCACCGCCATCATTGGCCCCAACGGCGCCGGCAAGTCCAACCTCATGGACGCCATAAGCTTCGTCCTCGGCGTCAGAACCGGCCAACTCCGCGGTGCGCAACTCAAGGACCTCATCTACGCCTTCGACGACAAAGAGAAAGAGCAGAAAGGACGCAGAGCCTTCGTTCGCTTGGTCTACCAACTCGCTAACTCCACTGAGATCCAATTCACCCGAACCATCACCAGTGCCGGAGCTAGTGAGTACCGCGTGGACGGCAACGTTGTAAACTGGGATGCCTACAACGCCAGACTCAAATCCCTTGGCATTCTTGTCAAGGCTCGCAATTTCTTAGTCTTTCAGGGTGACGTGGAATCCATTGCGTCGAAAAATCCGAAAGAGCTCACTGCGCTGATTGAGCAGATATCTGGTTCTGATGAGCTCAAGAGGGATTTTGAGCAGTTCGAAGAGGAAAAAGGTGCTGCTCAGGAAAAATCAGCGCTTGTTTATCAGAAGAAGAGGACGGTGGTTACGGAGAGAAAGCAGAAGAAAGCGCAAAAGGAAGAAGCAGAAAAACATCTACGCCTGCAGGATCAACTGAAATCTATGAAGAAAGAGCATTTTTTGTGGCAATTGTTTAATATAGAAAATGATATTGTTAAAACAACTGATGATCTTGAAGATGAGAAAAAGAGTCGTGAAGGCATTATTGAAGAACTAGAAAAATTTGAAAATGAAGCTGGTAAAAAGAAAAAAGAACAGGCCAAATATCTGAAAGAGATTGCACTACGTGAAAAGAGAATTTCTGAGAAAAGCAACAAGCTTGACAAGAGTCAACCTGAGCTTCTTAAGTTAAAGGAGGAAATGAATCGAATCAATTCAAAAATAAAGAAAGGGAAGAAAGAGCTGGATAAAAAAAGGGAAGAACGGAGGAGGCATGCTGCTGATATAGCTGAGCTACAGAGGGGCATCCAGGATCTTTCTGCAAAGATGGCAGAGCTACAGGTAAAAGGTCGAGATGTTGGTGAACAGCTAAAGTTGGATGGCAATGACTTGGAAGAATATTTTCGAATCAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAAGGAAGAAAAAGAGCTTCTAGATAGGCAACAACATGCTGATAGTGAAGCGCAAAAGAATTTAGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAATTGAATTCACAGGAAGAACAAATGCGAGCAAGGCTAAAAAAAATTCTTGATAATTCTACAAAAAATAAGGATGGCCTTGCAAACTTGAAAAAAGAACTACGTGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAATTTGAAGTTAAAAATTGGTGAATTAGAAAATCAACTACGAGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGCCAAATTGTCTCAAGCTGTAGAGACTCTGAAACGTCTGTTTCAAGGAGTTCACGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCTATGGGTAGATTTATGGATGCAGTTGTAGTTGAGGATGAAAAGACTGGGAAAGAATGCATCAAGTATTTGAAAGATCAGAGGCTTCCTCCACAGACATTTATTCCTCTGCAGTCTGTTCGGGTGAAGCCAATTATGGAAAGATTGCGCACATTAGGGGGTACTGCAAAACTGGTTTTTGATGTGATTCAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAATTTTAAGCTGGAGTGGTGAGAGGTTTAAAGTTGTAACTGTGGATGGAATTCTGCTGACAAAATCGGGGACTATGACTGGTGGAACTAGTGGTGGAATGGAAGCTAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAGAAGAAAGAGCAGTACGAACAAGAGTTGGAAGAGCTAGGATCAATAAGGGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAACAGACCATCAAAGAAGAAATTGAACGTATCAGTCCAGAACTGCAGAAGTTAAATGACGCTGTTAACAAGAGGAATGCAGAAATACGTAAGATTGAGAAGAGGATAAATGAAATCACTGATCGCATATACAAAGACTTCAGCAAGTCAGTTGGGGTAGCAAACATCCGTGAATATGAAGAAAATCGACTCAAAGCTGCTCAAAATGTAGCAGAAGAGAGGCTGAACCTGAGTAGCCAACTTTCAAAATTGAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAGTTCTCGAATTCAAGAATTGGAATCTTCTCTCAGTGCTTTAGAGAAGGATTTAAAACAGGTACAGAACAAAGAGGCTGAAGCAAAGTTAGCAGCTGAAAATGCTACTGAAGAGATTAATCAGTTTAAGGAAGAAACTAAAGAGTGGAAATCAAAGTCAGAAGATTGTGAAAAGGAAATCCAAGACTGGAAGAAGAAAGCTTCTGCAGCCACAACAAACATATCCAAACTCAATCGTCTGATAAACTCTAAGGAGGCACAGATTGAGCAGTTGATCGTGCAAAAGCAGGAAATATCAGATAAGTGTGAACTAGAACAGATTAGCCTTCCAATCATATCAGATCCCATGGATACTGGTAGCTCAACCCCAGGTCCAGTTTATGACTTTAATCAACTAAGTAGGGCACTGAGAGATAGGAGACACTCTGACAGGGATAAAATTGAGGTAGAATTTAAGCAAAAAATGGATGCCTTGATGTCCGAGATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAGTATGATGCCCTGCTAGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGGAGAGGAAAAAGCACAGAGATTCAATGACGTTAAGGAGAGGAGGTACCGCTTGTTCATGGAAGCTTTCCACCATATATCTAGTAATATAGATAAAATTTACAAACAACTCACCAAGAGCAACACACATCCACTGGGGGGAACAGCATACTTAAACTTGGAAAATGAGGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAACTATCTGGTGGGGAAAAGACAGTTGCTGCTCTTGCATTGCTATTTTCCATCCACAGTTTTAAGCCTTCACCATTTTTTATATTGGATGAAGTTGATGCTGCGTTGGACAACTTGAATGTTGCTAAGGTTGCTGGCTTTATTCGTTCCAAATCTTGTGAAGGGGCGAGGGCTAGTCAAGATGCTGATGGTGGAAATGGTTTTCAGAGTATCGTGATATCACTGAAAGACACCTTCTATGACAAAGCCGAAGCATTAGTTGGGGTTTATAGGGACTCTGAAAGAGCGTGTTCGAGAACTCTCACATTTGATCTAACTAAATATCAAGAGTCCAAAAATTCATCCGCAGGGTCTAATTGA 3678 0.4152 MPSLLSPGKIHRLEMDNFKSYKGFQVIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDKEKEQKGRRAFVRLVYQLANSTEIQFTRTITSAGASEYRVDGNVVNWDAYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTALIEQISGSDELKRDFEQFEEEKGAAQEKSALVYQKKRTVVTERKQKKAQKEEAEKHLRLQDQLKSMKKEHFLWQLFNIENDIVKTTDDLEDEKKSREGIIEELEKFENEAGKKKKEQAKYLKEIALREKRISEKSNKLDKSQPELLKLKEEMNRINSKIKKGKKELDKKREERRRHAADIAELQRGIQDLSAKMAELQVKGRDVGEQLKLDGNDLEEYFRIKEEAGMKTAKLKEEKELLDRQQHADSEAQKNLEENLQQLRNRESELNSQEEQMRARLKKILDNSTKNKDGLANLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELKADRYENERDAKLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGRFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIMERLRTLGGTAKLVFDVIQFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYEQELEELGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLSQEKQTIKEEIERISPELQKLNDAVNKRNAEIRKIEKRINEITDRIYKDFSKSVGVANIREYEENRLKAAQNVAEERLNLSSQLSKLKYQLEYEQNRDMSSRIQELESSLSALEKDLKQVQNKEAEAKLAAENATEEINQFKEETKEWKSKSEDCEKEIQDWKKKASAATTNISKLNRLINSKEAQIEQLIVQKQEISDKCELEQISLPIISDPMDTGSSTPGPVYDFNQLSRALRDRRHSDRDKIEVEFKQKMDALMSEIERTAPNLKALDQYDALLEKERAVTEEFEAVRKEGEEKAQRFNDVKERRYRLFMEAFHHISSNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSFKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARASQDADGGNGFQSIVISLKDTFYDKAEALVGVYRDSERACSRTLTFDLTKYQESKNSSAGSN* 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0335 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 271 IPR027417 -
Apr8g0335 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1159 IPR027417 -
Apr8g0335 1225 Gene3D - 495 577 - -
Apr8g0335 1225 Coils Coil 170 190 - -
Apr8g0335 1225 CDD ABC_SMC1_euk 1096 1211 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Apr8g0335 1225 PIRSF SMC 8 1218 IPR024704 GO:0005524|GO:0016887
Apr8g0335 1225 SMART SMC_hinge_2 517 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Apr8g0335 1225 Gene3D - 944 1216 IPR027417 -
Apr8g0335 1225 Gene3D - 8 229 IPR027417 -
Apr8g0335 1225 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1216 - -
Apr8g0335 1225 Pfam RecF/RecN/SMC N terminal domain 10 1199 IPR003395 -
Apr8g0335 1225 Coils Coil 709 743 - -
Apr8g0335 1225 Coils Coil 384 439 - -
Apr8g0335 1225 Gene3D - 578 660 - -
Apr8g0335 1225 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Apr8g0335 1225 Coils Coil 829 933 - -
Apr8g0335 1225 Coils Coil 792 812 - -
Apr8g0335 1225 Coils Coil 211 231 - -
Apr8g0335 1225 Coils Coil 307 362 - -
Apr8g0335 1225 Coils Coil 751 778 - -
Apr8g0335 1225 Coils Coil 454 502 - -
Apr8g0335 1225 Pfam SMC proteins Flexible Hinge Domain 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Apr8g0335 1225 Coils Coil 668 702 - -
Apr8g0335 1225 Coils Coil 251 285 - -
Apr8g0335 1225 SUPERFAMILY Smc hinge domain 481 682 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Apr8g0335 1225 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0335 Apr-Chr8 2802466 2818185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0335 6 92 Structural Maintenance of Chromosomes family AT5G07660 35.106 1.24e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0335 K06636 - gmx:100785315 2060.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0335 8 2802466 2818185 Apr8g0335 8 2802466 2818185 ECH