Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0329 ATGGAGTTCGATTCATCTTTCTTTGAATACCAATACCTCAACACTCCCTTTGTGTCTGGAGAATCATTCTCGTGGGTGGATGACTTCTTTTTCTTGAAAGAAGATAACAACACTACCCTTCCCTTAAACTTAACCAGCAATGACCACTCACAGATCAAGGAATCATCCTCAGAATCCAACTCTTCAGGCTCTTTGGTAAGCACTGAGTCACAAGAAGTGTCTTCAAATTTAACGCATGCCCAAGTCATCAAGGGAACACAAGCATCACCGTCTCCACAAAAGGAGAAAAGACCCTTCAGAGGTGTGAGGAGAAGGCCATGGGGGAAATTCGCCGCAGAAATAAGAGACTCAACAAGAAATGGGGTTCGAGTGTGGATTGGAACCTTTGACACAGCTGAAGCAGCAGCACTAGCTTATGACCAAGCAGCTTTATCCACAAGAGGGTCCATGGCAGTGCTGAACTTTCCTGAGGAAGTGGTGAGAGAATCACTAAAAGACATGGCCAATAAACCATCGGAAGATGATTCCTCTCCTGTGTTAGCACTCAAGAGGAAACACACCATGAGAAGAAAATCCAAGGCAAGTAACAAAAAGACTAAAAGGGGTGAGAAGGAGTTAGATTTGGTTTCCCAAAATGTGCTGGTTTTGGAAGATTTGGGTTCTGAATATCTTGAACAACTTCTTAGCTTGACTTCTTCTGAAGTCTTCTGCTAG 714 0.4356 MEFDSSFFEYQYLNTPFVSGESFSWVDDFFFLKEDNNTTLPLNLTSNDHSQIKESSSESNSSGSLVSTESQEVSSNLTHAQVIKGTQASPSPQKEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMANKPSEDDSSPVLALKRKHTMRRKSKASNKKTKRGEKELDLVSQNVLVLEDLGSEYLEQLLSLTSSEVFC* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0329 237 SUPERFAMILY DNA-binding domain 99 157 IPR016177 GO:0003677
Apr8g0329 237 MobiDBLite consensus disorder prediction 43 93 - -
Apr8g0329 237 Gene3D AP2/ERF domain 98 158 IPR036955 GO:0003700|GO:0006355
Apr8g0329 237 ProSiteProfiles AP2/ERF domain profile. 98 156 IPR001471 GO:0003700|GO:0006355
Apr8g0329 237 PANTHER DNA-BINDING DOMAIN 8 231 IPR044808 GO:0003700|GO:0009873
Apr8g0329 237 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
Apr8g0329 237 SMART rav1_2 98 162 IPR001471 GO:0003700|GO:0006355
Apr8g0329 237 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 231 - -
Apr8g0329 237 MobiDBLite consensus disorder prediction 43 102 - -
Apr8g0329 237 CDD AP2 99 157 IPR001471 GO:0003700|GO:0006355
Apr8g0329 237 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Apr8g0329 237 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0329 Apr-Chr8 2754201 2754914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0329 89 228 AP2-EREBP Transcription Factor Family AT3G23240 61.702 1.47e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g0329 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0329 K14516 - gmx:100784784 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0329 8 2754201 2754914 Apr8g0329 8 2754201 2754914 ECH
Apr4g0020 4 226805 227521 Apr8g0329 8 2754201 2754914 PCT