Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0328 ATGGAAGGTGGAAGATCAGTTTCAAATGGCAATGGAAATGGTGAGGTTCGGTATAGAGGGATTAGAAGGAGGCCATGGGGTAAGTTTGCGGCAGAGATTCGTGACCCTACAAGGAAAGGGACTCGTATATGGCTTGGAACTTTTGATACTGCTGAGCAAGCTGCAAGGGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCACAGAGCCATTCTCAATTTCCCAAATGAGCATCAAGCTCCTAATCCTAACTCTTCCTTACCTATGCCTCTCACTATGTCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCCTACTCTGGTCAGGGACTTGTCATTCCTGGAGCAATGCAAGGTTGTGATGATACTGTTGAGTTGGAATACTTGGATAATAAGTTGCTTGAAGAACTCCTTCAAGTGCAAGATAATAGACATCTTTTTAAGTGA 447 0.4407 MEGGRSVSNGNGNGEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEHQAPNPNSSLPMPLTMSPPPPPSSSSSSYSGQGLVIPGAMQGCDDTVELEYLDNKLLEELLQVQDNRHLFK* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0328 148 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Apr8g0328 148 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Apr8g0328 148 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Apr8g0328 148 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Apr8g0328 148 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Apr8g0328 148 PANTHER DNA-BINDING DOMAIN 13 139 IPR044808 GO:0003700|GO:0009873
Apr8g0328 148 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Apr8g0328 148 PANTHER - 13 139 - -
Apr8g0328 148 MobiDBLite consensus disorder prediction 75 110 - -
Apr8g0328 148 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Apr8g0328 148 MobiDBLite consensus disorder prediction 88 102 - -
Apr8g0328 148 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0328 Apr-Chr8 2740428 2740874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0328 13 145 AP2-EREBP Transcription Factor Family AT3G23230 53.383 1.13e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g0328 AP2 9.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0328 - - gmx:100500462 187.193