Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0327 ATGACTTCTCCATTCTTTCAGAACACAGATTGGGACATGTTTCAAGACCCTTCTGAAATCTTGTTCCAATCATCATCAACAAATGTTCTCAATGACCCTATCCACGATTCTCTCTCCTTCGACATGGTTGACTTCTCCACCGGTTCATCTCTACCAACAGAAGAAAACCACAACGAGGCAAAGCAATTGGTTGTGAAGTCTGAAGCAAAACAAGCTGAGAGTAAGGAAAGGTCATATATAGGTGTGAGGAAAAGGCCATGGGGAAAATATGCAGCTGAAATTAGAGACACAACAAGAAACGGTACAAGGGTTTGGCTTGGAACCTTTGACAGTGCTGAAGCTGCTGCTTTAGCTTATGATCAAGCTGCATTCTCCATGAGAGGTCATAACGCTGTTCTCAATTTTCCTGTCAAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATAGTTGCTGCAATGGCTCTTCACCCGCACTTGCACTCAAGGAGAGGCACTGTGTCCAGAGAAAGTTGTCATTAAAAGCTAAAAGGTGTAAAGGAAAAGAGAAATCAGAGGCAACAACCTCGTGTATGGTGGTGTTAGAGGACTTGGGTGTTGAATATTTAGAGCAACTTCTCAGCATATCCGACCAAAGTGCAAGCCCTAGCTACTTCAACTAA 660 0.4273 MTSPFFQNTDWDMFQDPSEILFQSSSTNVLNDPIHDSLSFDMVDFSTGSSLPTEENHNEAKQLVVKSEAKQAESKERSYIGVRKRPWGKYAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYSCCNGSSPALALKERHCVQRKLSLKAKRCKGKEKSEATTSCMVVLEDLGVEYLEQLLSISDQSASPSYFN* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0327 219 PANTHER DNA-BINDING DOMAIN 50 214 IPR044808 GO:0003700|GO:0009873
Apr8g0327 219 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Apr8g0327 219 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Apr8g0327 219 SMART rav1_2 78 142 IPR001471 GO:0003700|GO:0006355
Apr8g0327 219 Pfam AP2 domain 79 129 IPR001471 GO:0003700|GO:0006355
Apr8g0327 219 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700|GO:0006355
Apr8g0327 219 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700|GO:0006355
Apr8g0327 219 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Apr8g0327 219 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
Apr8g0327 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 50 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0327 Apr-Chr8 2722490 2723189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0327 58 214 AP2-EREBP Transcription Factor Family AT3G23240 52.229 1.79e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g0327 AP2 6.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0327 K14516 - gmx:100812017 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0327 8 2722490 2723189 Apr4g0859 4 6937286 6937777 ECH
Apr8g0327 8 2722490 2723189 Apr8g0327 8 2722490 2723189 ECH
Apr4g0019 4 207441 208181 Apr8g0327 8 2722490 2723189 PCT