Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0326 ATGGTTCAAGGTTTTGAGAATACAGATTGGGACATATTGTTCCAATCATTATCAAGAAAAGTTGTTCATCACCCTCTCCACGATTCTCATTCCTTCGACATGGTTGACTTCTCCAACGATTCATTTCTACCAACAGAAGAAAACCACAACGAGCCAAAGCAATTGGTGGTGAAGTCTGAAGCAAAACAAGTTGAGAGTAAGAAAATATCATATATAGGTGTGAGGAAAAGGCCATGGGGAAAATATGCAGCTGAAATCAGAGACACAACAAGAAACGGTACAAGGGTTTGGCTTGGAACCTTTGATAGTGCTGAAGCTGCTGCTTTAGCTTACGATCAAGCTGCATTCTCCATGAGAGGTCACAACGCTGTACTCAATTTTTCTGTCAAAAGGGTTAAAGAATCTTTGCAAGAGATTCAATATAGATGCTGCAATGGCTCTTCACCCGCACTTGCACTCAAGGAGAGGCACTGCATTCAGAGAAAGTTGTCATCAAAAGCTAAAAGGTGTAAAGAAAAAGAAGAATCAGAGGCAACAACGCCAAGTGTGATGGTGCTGGAGGACTTGGGAATTGAATATCTTGAGCAACTTCTCAGCATATCAGATCAAAGTGCAAGCCCTAGCTGCTTCAACCAATAA 639 0.4147 MVQGFENTDWDILFQSLSRKVVHHPLHDSHSFDMVDFSNDSFLPTEENHNEPKQLVVKSEAKQVESKKISYIGVRKRPWGKYAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFSVKRVKESLQEIQYRCCNGSSPALALKERHCIQRKLSSKAKRCKEKEESEATTPSVMVLEDLGIEYLEQLLSISDQSASPSCFNQ* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0326 212 CDD AP2 71 127 IPR001471 GO:0003700|GO:0006355
Apr8g0326 212 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
Apr8g0326 212 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Apr8g0326 212 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Apr8g0326 212 Gene3D AP2/ERF domain 70 130 IPR036955 GO:0003700|GO:0006355
Apr8g0326 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 34 200 - -
Apr8g0326 212 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Apr8g0326 212 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Apr8g0326 212 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Apr8g0326 212 PANTHER DNA-BINDING DOMAIN 34 200 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0326 Apr-Chr8 2700535 2702067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0326 62 206 AP2-EREBP Transcription Factor Family AT3G23240 56.463 3.32e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr8g0326 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0326 K14516 - gmx:100812017 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0326 8 2700535 2702067 Apr8g0326 8 2700535 2702067 ECH
Apr4g0859 4 6937286 6937777 Apr8g0326 8 2700535 2702067 PCT
Apr8g0326 8 2700535 2702067 Apr4g0018 4 200631 201299 PCT