Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0323 ATGGCACAGAACAAGAACCACTCCTACAAGCTCGGTTATCAAGCTTTCCCACCCATCAAAACCAAAGCTATTACACTCCATCACCCACCACAGACTGCTTCCTCAGACTATGCTTTTCCCATATTTGTCATTGTTGTGCTAAGCATTTTGGCCACAGTTTTGTTGCTCCTCAGCTACTTCACTTTTTTGACAAAATATTGGCATCAAGTTAATCCAATTAGATGGATTTCAATCCTGCGAGCTAGACAGAATGAGGATCCCTTCATAGCATTTTCTCCTGCAATGTGGAACCGGGGTCTTGATGAGTCCGTCATCAGAGAAATCCCAACATTTCAGTTCATGAAAGGAGAACGTGAGGACCAAAGTGTGTATGGTTGTGTGGTTTGTTTGACTGAGTTTAAGGAACAGGATGTGCTAAAAGTTCTTCCCAGTTGCAACCATGCCTTTCATTTGGATTGCATTGATATTTGGCTTCAGACCAATTCCAATTGCCCTCTTTGTAGATCAAGCATTTCAGGCAACACACACTGTCCAATTGACCACATTATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCTAACATGGGTAGTGATGAAGATTTTGTGGTCATTGAACTGGGGGGAGAACCTGGGGGAGTGATGCCACAGGTGCAACAAGAGAGATATGACTCAAGGGGAAGCATAGGACATGGTAGAATTCACCCTACAAGGAAGGTGGAGCAGCAGAAGCTTGGTCTTGGACACTTGAAACCAAGGAAGTGCCACCGTGTTTCAATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGATCAGTTTTCTATTCAGCCCATTAGAAGATCTTTCTCAATGGATTCTGCACATGATAGACAAGCTTACTTAGATGTTCAAGCCATTATGCAACAAAACAGGCATCAGAATGAGGCTAGTGCTAGTGAGGATTGTAATAGCAGAGGTCGAAGAGCATTCTTTCCATTTTGTTATGGAAAGGGATCAAAAAATGCAGTCCTTCCTTTGGAAAATGATGTTTAA 1044 0.4253 MAQNKNHSYKLGYQAFPPIKTKAITLHHPPQTASSDYAFPIFVIVVLSILATVLLLLSYFTFLTKYWHQVNPIRWISILRARQNEDPFIAFSPAMWNRGLDESVIREIPTFQFMKGEREDQSVYGCVVCLTEFKEQDVLKVLPSCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTHCPIDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEPGGVMPQVQQERYDSRGSIGHGRIHPTRKVEQQKLGLGHLKPRKCHRVSIMGDECIDIRKKDDQFSIQPIRRSFSMDSAHDRQAYLDVQAIMQQNRHQNEASASEDCNSRGRRAFFPFCYGKGSKNAVLPLENDV* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0323 347 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 344 - -
Apr8g0323 347 PANTHER RING-H2 FINGER PROTEIN ATL16 1 344 IPR044600 GO:0016567|GO:0016740
Apr8g0323 347 CDD RING-H2_PA-TM-RING 126 168 - -
Apr8g0323 347 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Apr8g0323 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 174 IPR013083 -
Apr8g0323 347 SUPERFAMILY RING/U-box 125 172 - -
Apr8g0323 347 SMART ring_2 126 167 IPR001841 -
Apr8g0323 347 Pfam Ring finger domain 126 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0323 Apr-Chr8 2686915 2687986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0323 30 309 C3H Transcription Factor Family AT1G04360 44.839 7.81e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0323 K19041 - gmx:100809883 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0323 8 2686915 2687986 Apr8g0323 8 2686915 2687986 ECH