Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0318 ATGGAAAAATCCTTCGAGTCTCCGTCTCTATCTTGCGGAGGCAAATCCAAGAAGAAGCTTCATTTCCGAAGCTCTGAAGTTGAATCGCCAGATTCAGTTCAACTGAGCTCCAAGACGCCGGAGAAGAAGACACTGCAGCGCACGCGCAACCGCGGCGTTGCGCTCTCCGTCGCGGAAATCAGGAAGGTCGCGGAGCGCTTGCAGGATCGGAAGCAATGCAATGATAAGACTTCGTCGCAGGTTAAATCTGCTAGGAGGCAAATTTCTTTGCCTTCCCCTAGTAAACCCAAGACTTTTTCTGATGATACACTGAAGCTACCCAAAAAGTATGAATTTTTGGGAGAGTTCTTCGATAGCTTGGATAGTTCGATTCGATTATTGCATTTGAAGGGATCGATGCCGTCCTTTACAAATATCAGTCCCAAGATTGAATGTTTAACTGATAGGAGGTTTACGCATGGCCATCTGGCCCAGATGAAATTTGTCTTACCTGAGGCTATTGTTATTAAGAAGGTGTTGGTGTTTGATGAACGGACAAGTTGTATGAAGCCGGATCTTCATGTTACTATAAATCCTGATGCGGTGGAATCTGATGCAAAGGCGTTGCCTCAATGCGGGAGTGTGTCGCTCAGGAAGTTGTTTCGCACACGGCTCAGAGATTTTTGTAAATCTCATCCTGAGGGTGATGAAATTCCAGAGGAAACACTGCCTGAGCCATTCAATCACCCAAAGAAAGACAGTCTATTGGACATGTTGAAAACACGGTCCTCATCTCTGGCTACAGGGACATTATCTGATGCATGTGAAGCTCATTCTCCAGCAATTTTGACTCCATGTATGAAGAATAATGACGTTGCCAATGATGCAGAACCTGGTAGCATAGAAGAAAATTTGTCAGTGCCTATCACGACATCGGCTGAATTGCTTTACCAGCAGCCGGCAGTAGCCTCTCATGTGCCTCAATCTTTTCGAAGGCGATTTTCTCAGAAATGTAAAGCGAATGGGGCAGATAACGTACAGCAAAAGCCTCCTTCAGATTCATTACCACCCCTGGCTTTTTCAGTTTCAGTGTCTAGCCTGAAGAAAAATCCGTCTGTTGATGGTACTAAATGTCATCTGAGAGCTTTCCCATCTAAGTTGGCTTCCAAAACAACTAGTAGTGAAAGGTGTACAGCTATGTGTGCCTCTTTGGAATCATCCAATGCTCCCCCTTGTACTCCAAGCAAAACCATTGAGCATAAAGAAAACAAAGATGGGTCTCTAGAAAGCGTTGATGCCATGTCAACTCCAGCTAAATTTATTTCTACTCCGTCCAGGTTGATGACTGCCACACCTGCCTTGCCTTCACCCAAAAGACATTTTGTGAGCCCAGATGACAATTCTACCAGTTCTTTGAATAAGTTAGTTAGGCGCCCACCTCGTTCTAGGTCATTGAAATTTGACTCTCCAGTGAAGAATAAGGAGACTGTGAATGAAGACATTGCTGGTGCCTTACCAATAGATGATGATGTTTTTGAAATTCTCCCAGAAAATCTTATAAAATCGATTAGGGAAAAGGAAAAAATGGCAATGGAGGAAAGAGATCCTACTATCTCACAAGCAAAGAGACGGAAAAAAATTATTGCCAGCCTACCTAAGCTGTTTAACATGATTCACCTCTTGTTTCACAAGCGTTCTGTTATCACTAAAGAGGAGCTTGTGAGCAAGATAATCTCAAACCACTGTGATATTGTTGACAGAAGTGAAGTTGAAGAACAGATGAAATTGTTGCAAGAACTAGTACCTGAAGGGATTTCTGAGAAGTTGGCCTCTAGTGGGGATTTCCTAGTCTGCATAAATAAAATGTTGAACCCTGAAACTGTACGAGCATCACTTGAAGAAGCAAAGTGA 1890 0.4344 MEKSFESPSLSCGGKSKKKLHFRSSEVESPDSVQLSSKTPEKKTLQRTRNRGVALSVAEIRKVAERLQDRKQCNDKTSSQVKSARRQISLPSPSKPKTFSDDTLKLPKKYEFLGEFFDSLDSSIRLLHLKGSMPSFTNISPKIECLTDRRFTHGHLAQMKFVLPEAIVIKKVLVFDERTSCMKPDLHVTINPDAVESDAKALPQCGSVSLRKLFRTRLRDFCKSHPEGDEIPEETLPEPFNHPKKDSLLDMLKTRSSSLATGTLSDACEAHSPAILTPCMKNNDVANDAEPGSIEENLSVPITTSAELLYQQPAVASHVPQSFRRRFSQKCKANGADNVQQKPPSDSLPPLAFSVSVSSLKKNPSVDGTKCHLRAFPSKLASKTTSSERCTAMCASLESSNAPPCTPSKTIEHKENKDGSLESVDAMSTPAKFISTPSRLMTATPALPSPKRHFVSPDDNSTSSLNKLVRRPPRSRSLKFDSPVKNKETVNEDIAGALPIDDDVFEILPENLIKSIREKEKMAMEERDPTISQAKRRKKIIASLPKLFNMIHLLFHKRSVITKEELVSKIISNHCDIVDRSEVEEQMKLLQELVPEGISEKLASSGDFLVCINKMLNPETVRASLEEAK* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0318 629 SUPERFAMILY "Winged helix" DNA-binding domain 102 240 IPR036390 -
Apr8g0318 629 MobiDBLite consensus disorder prediction 398 419 - -
Apr8g0318 629 MobiDBLite consensus disorder prediction 1 52 - -
Apr8g0318 629 MobiDBLite consensus disorder prediction 69 101 - -
Apr8g0318 629 CDD Cdt1_m 91 244 IPR014939 -
Apr8g0318 629 MobiDBLite consensus disorder prediction 455 470 - -
Apr8g0318 629 MobiDBLite consensus disorder prediction 77 99 - -
Apr8g0318 629 Pfam DNA replication factor Cdt1 C-terminal domain 512 599 IPR032054 -
Apr8g0318 629 MobiDBLite consensus disorder prediction 27 41 - -
Apr8g0318 629 Pfam DNA replication factor CDT1 like 106 201 IPR014939 -
Apr8g0318 629 Gene3D - 502 629 IPR038090 -
Apr8g0318 629 SMART CDT1_2 106 238 IPR014939 -
Apr8g0318 629 PANTHER DNA REPLICATION FACTOR CDT1 19 629 IPR045173 GO:0003677|GO:0030174|GO:0071163
Apr8g0318 629 MobiDBLite consensus disorder prediction 448 484 - -
Apr8g0318 629 CDD Cdt1_c 502 626 IPR032054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0318 Apr-Chr8 2657420 2660556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0318 428 627 Core DNA Replication Machinery Family AT2G31270 50.935 1.90e-51 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0318 K10727 - gmx:100778818 691.034