Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g0312 ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTGTGAGGGGTTGTGTTTTTGCACCTTACTTTTGCCATGAGCAGGGTGCTACTCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTTTCAAAGCTCCTTGCTCATCTTCCTGTGAGTGATCGTTGTGAAGCTGCAGTCACAATCTCATATGAAGCTCAAGCAAGACTTCAAGACCCTATTTATGGCTGTGTCTCCCATATTTTTGCACTCCAACAACAGGTTGTTAATTTACAAGCACAACTAGCTTATCTCAAGGAACAAGCAGCTCAGAGTTGTGTCAATGTCTCTGCCCAAGAAAACCCTAGTGAAAAATTCTTCGAAAAATCTTATACTTTACCCCAAGATCTTCAAAGTTGGTTCCAGGTGGAAAATTCAAACCTGGGGCAGGATTTTTTTCCTAATTTGGGTACTAGTTTATCCTCAGCAACACAACATTATGGGAACAATGCTCTGATGGATGATCTTAACCCTATTAATGGGATTAATTATGAAAAATCTGGAGCCATGGAAGAGAGTAGCTCATTTTCTAGCTTTGATGATAGTTCTAATTACTCCATGTCCTATGACATGCAAACTAATAGGAGGACGTGGGGGTATCATGAAGTGGAGGATCTACATTCTGTGGCTTTTGGATACAGTACTGGATCACATTCATAA 717 0.4073 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCVNVSAQENPSEKFFEKSYTLPQDLQSWFQVENSNLGQDFFPNLGTSLSSATQHYGNNALMDDLNPINGINYEKSGAMEESSSFSSFDDSSNYSMSYDMQTNRRTWGYHEVEDLHSVAFGYSTGSHS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g0312 238 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Apr8g0312 238 Coils Coil 87 107 - -
Apr8g0312 238 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Apr8g0312 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 232 - -
Apr8g0312 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g0312 Apr-Chr8 2613764 2614602 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g0312 7 125 AS2 family AT3G58190 80.165 1.27e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr8g0312 LOB 5.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g0312 K13945 - gmx:100805623 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0312 8 2613764 2614602 Apr8g0312 8 2613764 2614602 ECH
Apr4g0015 4 148790 149578 Apr8g0312 8 2613764 2614602 PCT